Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq66148 104 2e-17 >seq66148 Length=2144 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||||| || || | |||||||| || Sbjct 450 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGC 391 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| || |||| || || || |||||| || | ||||||||| || || | Sbjct 390 TTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTG 331 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | | ||| ||||||| |||||| || | ||||||| | ||||| ||| Sbjct 330 GCCTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCTGTC 271 Query 18303 AATGTTTTTACAAAAATTTGCATTTTT 18329 | || || ||||| || ||||||||| Sbjct 270 AGGGTCTTCACAAAGATCTGCATTTTT 244 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || ||||| || || ||||||||||||| || || | |||||||| || Sbjct 906 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGC 847 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| || |||| || || || |||||| || | ||||||||| || || | Sbjct 846 TTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTG 787 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| ||||||| |||||| ||| | ||||||| | ||||| ||| Sbjct 786 GCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCCGTC 727 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 726 AGGGTCTTCACAAAGATCTGCAT 704 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || || || || ||||||||||||| || || | |||||||| || Sbjct 678 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGC 619 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| || |||| || || || |||||| || | ||||||||| || || | Sbjct 618 TTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTG 559 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | | ||| ||||||| |||||| ||| | ||||||| | ||||| ||| Sbjct 558 GCCTTGACATTTTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCCGTC 499 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 498 AGGGTCTTCACAAAGATCTGCAT 476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378991758824805