Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq35785 116 3e-21 seq66148 111 1e-19 >seq35785 Length=10255 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| ||||| |||||||| || || || || Sbjct 9816 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTC 9757 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||| ||||| || || ||||| || || ||||| ||||||||||| ||| Sbjct 9756 CCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTG 9697 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 9696 CCAGTCTCTGTCTGAGACTCAATGATGGC 9668 >seq66148 Length=2144 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||| ||||||||||| || |||||| | || ||||| || Sbjct 244 AAAAATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAGGTTGAGCC 303 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| | |||| ||||| | || ||||||||||||| | || || || Sbjct 304 CAGTGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGA 363 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || || ||||| ||||| ||| ||||||| || || ||| || Sbjct 364 TCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTA 423 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || || ||||| || || | |||||||| || Sbjct 424 CAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 474 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 703 CATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTTGAGCCCAG 762 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||||| | || || || || Sbjct 763 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCA 822 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||| ||||| ||| ||||||| || || ||| || || Sbjct 823 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 882 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || ||||| || |||||||| || || | |||||||| |||| Sbjct 883 CATCCAGAAGGAATCCACCCTTCATCTTGTGCTGCGCCTGAGGGGTGGTA 932 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 475 CATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTTGAGCCCAG 534 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| ||||| | || ||||||||||||| | || || || || Sbjct 535 TGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCA 594 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||| ||||| ||| ||||||| || || ||| || || Sbjct 595 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 654 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || ||||| || || | |||||||| || Sbjct 655 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445341868796880