Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq23705 132 7e-26
seq29696 125 1e-23
seq35785 95.1 2e-14
>seq23705
Length=12823
Score = 132 bits (146), Expect = 7e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 9182 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 9123
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||||||||| | ||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 9122 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 9063
Query 50102 CAACAAGTCTCTCTCC 50117
|||| | |||||| ||
Sbjct 9062 CAACCACTCTCTCACC 9047
>seq29696
Length=9771
Score = 125 bits (138), Expect = 1e-23
Identities = 102/124 (82%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| |||||||| || |||||||| ||||| |||||||| ||||||| || | || |
Sbjct 6809 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 6868
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| |
Sbjct 6869 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 6928
Query 50102 CAAC 50105
| ||
Sbjct 6929 CTAC 6932
>seq35785
Length=10255
Score = 95.1 bits (104), Expect = 2e-14
Identities = 112/149 (75%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||| ||||| ||||||||||||||||| || || | || || ||||||| || |||
Sbjct 8434 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 8375
Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057
|| || || || || ||||| |||||| || || ||| | | || || ||||||| ||
Sbjct 8374 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8316
Query 80058 TTCCAAGTATATGGCCATAACTCCCGGTC 80086
|||| ||| ||||| | | | || ||||
Sbjct 8315 CTCCAGGTAGATGGCAAAAGCCCCAGGTC 8287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717584747729960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |