Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq23705 132 6e-26
seq29696 123 3e-23
seq35785 93.3 6e-14
>seq23705
Length=12823
Score = 132 bits (146), Expect = 6e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 9182 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 9123
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||||||||||| ||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 9122 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 9063
Query 42207 CAATAAGTCTCTCTCC 42222
||| | |||||| ||
Sbjct 9062 CAACCACTCTCTCACC 9047
>seq29696
Length=9771
Score = 123 bits (136), Expect = 3e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
||||||||||||| || | |||||| ||||| |||||||| ||||||| || | || |
Sbjct 6809 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 6868
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| |
Sbjct 6869 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 6928
Query 42207 C 42207
|
Sbjct 6929 C 6929
Score = 89.7 bits (98), Expect = 7e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376
|| ||| |||||||| || || || || | ||| || |||||||||||||| || |||
Sbjct 8964 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGGCTGTACATTTCTGAATGTATATTT 9023
Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430
|| ||||| ||||| || || |||||||| | || || || || |||||||||
Sbjct 9024 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGACTTGTACTTCT 9077
Score = 86.0 bits (94), Expect = 8e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818
||||| |||||||| | || |||||||| || || || || || ||||| ||||| |||
Sbjct 5509 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 5568
Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853
|||| || || ||||||||||| ||||| |||||
Sbjct 5569 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 5603
>seq35785
Length=10255
Score = 93.3 bits (102), Expect = 6e-14
Identities = 103/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||| ||||| ||||||||||||||||| || || | || || ||||||| || |||
Sbjct 8434 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 8375
Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140
|| || || || || ||||| |||||| || || ||| | | || || ||||||| ||
Sbjct 8374 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8316
Query 72141 TTCCAAGTATATGGC 72155
|||| ||| |||||
Sbjct 8315 CTCCAGGTAGATGGC 8301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670500032193640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |