Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq23705 107 2e-18
seq29696 102 7e-17
seq9207 84.2 2e-11
>seq23705
Length=12823
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
|||||||| || || || || || || || || || || ||||| || || | || ||
Sbjct 9180 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 9121
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| |||||||||||||||||| ||||||||||| || || ||||||||||| ||||| ||
Sbjct 9120 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 9061
Query 13295 ATCAACCTTTCACC 13308
| || || |||||
Sbjct 9060 ACCACTCTCTCACC 9047
>seq29696
Length=9771
Score = 102 bits (112), Expect = 7e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
||||||||||| || || ||||| ||||| || || || ||||| | |||| ||| ||
Sbjct 6811 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 6870
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| |||||| || | ||||| || || ||||| || |||||||| ||||||||||| |||
Sbjct 6871 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 6930
Query 13295 A 13295
|
Sbjct 6931 A 6931
>seq9207
Length=9337
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/142 (74%), Gaps = 4/142 (3%)
Strand=Plus/Minus
Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTT--GACATAACAGACATT 12859
||||||||| ||| |||| || |||| || | || ||| | |||||||| |
Sbjct 1273 TTAAAAATCTGCATCCAGAGTGAAGACATTGTC--CATTGTTTCTGCCATAACAGCAAAA 1216
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
||||||||| ||| | || ||||| || |||||||||||||| | ||||||||
Sbjct 1215 CGTTGATATTCTGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTC 1156
Query 12920 TCCATAAAATCGAAAGGATTTT 12941
||||| ||||| ||||||||||
Sbjct 1155 TCCATGAAATCAAAAGGATTTT 1134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430582209810978
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |