Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq28340 172 1e-37
seq66148 145 2e-29
seq23705 113 1e-19
seq29696 111 4e-19
seq38623 84.2 5e-11
>seq28340
Length=39979
Score = 172 bits (190), Expect = 1e-37
Identities = 136/163 (83%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|| ||||||||||||||| ||||||||||||| ||||| | ||||| | |||||||||
Sbjct 12851 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 12792
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
|| | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||||
Sbjct 12791 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTT 12732
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|| ||| | ||||| |||||||| ||| | ||||| |||||||
Sbjct 12731 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 12689
>seq66148
Length=2144
Score = 145 bits (160), Expect = 2e-29
Identities = 172/233 (74%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || || | || || ||||| | || ||||| ||||| || || |||||
Sbjct 477 ATGCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG 418
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| || || || || || || || |||||||| ||||| |||
Sbjct 417 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGA 358
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||| ||||| || || |||||||| | ||| || || || ||
Sbjct 357 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCA 298
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||||| | || || ||||| || || || || || ||||| |||||||||||
Sbjct 297 ACCTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATTTT 245
>seq23705
Length=12823
Score = 113 bits (124), Expect = 1e-19
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| ||||||
Sbjct 9059 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 9118
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
||||||| || ||||| ||||| ||| | |||||||| || ||| | || ||||| ||
Sbjct 9119 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 9178
Query 269258 GA 269259
||
Sbjct 9179 GA 9180
>seq29696
Length=9771
Score = 111 bits (122), Expect = 4e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|||||| | |||| |||||||| || || ||||| || |||||||| || ||||||||
Sbjct 6944 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 6885
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
| || |||||| ||||||||||||| | ||||| ||| | ||||| ||||||||| |
Sbjct 6884 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAACGAACTC 6825
Query 269246 ATAAGCAGGGACGA 269259
|| || || || ||
Sbjct 6824 ATCAGTAGAGATGA 6811
>seq38623
Length=13507
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429
|||| |||||||| |||||||| || || | || |||||||| || || ||||||||||
Sbjct 13124 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 13183
Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458
| || | ||| ||||||||||| || |||
Sbjct 13184 TCAGTCGCTGCTGATCAGGAGGAATGCCT 13212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150274437624812
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |