Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq28340 172 1e-37 seq66148 145 2e-29 seq23705 113 1e-19 seq29696 111 4e-19 seq38623 84.2 5e-11 >seq28340 Length=39979 Score = 172 bits (190), Expect = 1e-37 Identities = 136/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||||| Sbjct 12851 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 12792 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || |||||| Sbjct 12791 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTT 12732 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 12731 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 12689 >seq66148 Length=2144 Score = 145 bits (160), Expect = 2e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||| ||||| || || ||||| Sbjct 477 ATGCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG 418 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || || || || |||||||| ||||| ||| Sbjct 417 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGA 358 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || |||||||| | ||| || || || || Sbjct 357 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCA 298 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| | || || ||||| || || || || || ||||| ||||||||||| Sbjct 297 ACCTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATTTT 245 >seq23705 Length=12823 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 9059 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 9118 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||| | |||||||| || ||| | || ||||| || Sbjct 9119 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 9178 Query 269258 GA 269259 || Sbjct 9179 GA 9180 >seq29696 Length=9771 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || |||||||| Sbjct 6944 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 6885 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||||||| | Sbjct 6884 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAACGAACTC 6825 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 6824 ATCAGTAGAGATGA 6811 >seq38623 Length=13507 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| |||||||| |||||||| || || | || |||||||| || || |||||||||| Sbjct 13124 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 13183 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 | || | ||| ||||||||||| || ||| Sbjct 13184 TCAGTCGCTGCTGATCAGGAGGAATGCCT 13212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150274437624812