Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq59062 154 2e-32 seq65818 118 2e-21 seq28214 107 3e-18 >seq59062 Length=24493 Score = 154 bits (170), Expect = 2e-32 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 9624 GAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAAC 9683 ||||||||| || || ||||| || |||||| ||| || ||||| || ||||||| | Sbjct 3468 GAGTCGAGTAGTTTGGAACAGCTGCTCGTCATCCCACTCCGGATGCTCCTGTTTCAGGAT 3409 Query 9684 ATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCAC 9743 || || |||| |||||||||||| ||||| || |||||||||||||| | || || || Sbjct 3408 GTCACAGACTCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCCGGGAC 3349 Query 9744 CAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATA 9803 || ||||| |||| || || |||| | | | | ||| ||||| | ||||| || Sbjct 3348 CAAACCAAACACCTCCTGCCCCACAGAAAACTGGAGGTGTTCAGGCACGTGAGGAGGGTA 3289 Query 9804 GATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863 |||||| | |||| || || |||| || ||||||||||| |||||||| ||||| Sbjct 3288 GATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCGTCAATCATCTG 3229 Score = 150 bits (166), Expect = 3e-31 Identities = 219/308 (71%), Gaps = 1/308 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| |||||| | |||| || ||| | | || Sbjct 5476 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 5417 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| ||| || |||||||| || |||||||| | |||| Sbjct 5416 TATTGATTATTTCAAAGCCCACTCTTCCACCAAAGGTGCTCGGCTTCCAGTACTCAGGGG 5357 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || || || || || ||||| || || | ||| | || Sbjct 5356 AGCAGATAGCATTTCCCATCAGTCCCTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 5297 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | |||||||||||||| || ||||||||||| || | || || | |||| ||||| Sbjct 5296 TTTCACCGAAGATGGCACCTGGCCGGGGCTTTTCTACGAGGAGGCCTGGATACAGCTCCA 5237 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 5236 TAGCGTCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 5177 Query 8978 TTATTAAT 8985 ||||| || Sbjct 5176 TTATTGAT 5169 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || || ||||| || || || || || || | |||| Sbjct 1515 TCACCTTTAACACCCATTGGTGTCGGACAGTCATGTCCCACTGGCGGAAGGCTTCTTGTA 1456 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||| |||||||| |||||||||||||| ||| | ||| || |||||| | Sbjct 1455 TAATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAATTGTAATCACTGTTGTAAGTT 1396 Query 10407 GGAGGGCTGTCAATCAAATCGGATCT 10432 || |||||||||||||| | ||||| Sbjct 1395 GGTGGGCTGTCAATCAAGTGTGATCT 1370 >seq65818 Length=2167 Score = 118 bits (130), Expect = 2e-21 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||| |||| ||||| || || || ||||| ||||| ||||| Sbjct 312 TCACCGATGAGGATGAGACGAGCCGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGC 253 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || |||||||| | ||||| || | |||||| || | ||||||| || |||||||| Sbjct 252 TCCCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 193 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||| || |||| ||| ||||| |||| || || | ||||| || | | | ||| Sbjct 192 CAGAGCCCCGGCAGCAGCCCAAACACCTCCTGCCCCATCGCCAGCTGCTTCTCCTTGGGG 133 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACA 9844 || | || |||| |||||| ||| | |||| |||| | ||||||||||| Sbjct 132 ACGGTAGATGGGTAGACCATGTGGACCAGAGCATCGGTGACTGTGGGGGGATACA 78 >seq28214 Length=2975 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| ||| |||||||||| || |||||||||||||| | |||| Sbjct 2469 TCTTAACTATCTCAAAGCCCGTTGCTCCGCCGAATGTACTGGGTTTCCAGTACTCTGGGG 2528 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| || | | || || || |||||||||||||| |||| ||| | |||| Sbjct 2529 AGCAGATGGGATTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCCATCTCCACCATGC 2588 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | || || | || || || | || || || || ||||||| Sbjct 2589 TTTCCCCAAAAATACCATTAGGTTGAGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 2648 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 2649 GAGCATCAATGTCTCCATACAG 2670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707850027550160