Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq59062 154 2e-32
seq65818 118 2e-21
seq28214 107 3e-18
>seq59062
Length=24493
Score = 154 bits (170), Expect = 2e-32
Identities = 178/240 (74%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 9624 GAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAAC 9683
||||||||| || || ||||| || |||||| ||| || ||||| || ||||||| |
Sbjct 3468 GAGTCGAGTAGTTTGGAACAGCTGCTCGTCATCCCACTCCGGATGCTCCTGTTTCAGGAT 3409
Query 9684 ATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCAC 9743
|| || |||| |||||||||||| ||||| || |||||||||||||| | || || ||
Sbjct 3408 GTCACAGACTCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCCGGGAC 3349
Query 9744 CAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATA 9803
|| ||||| |||| || || |||| | | | | ||| ||||| | ||||| ||
Sbjct 3348 CAAACCAAACACCTCCTGCCCCACAGAAAACTGGAGGTGTTCAGGCACGTGAGGAGGGTA 3289
Query 9804 GATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863
|||||| | |||| || || |||| || ||||||||||| |||||||| |||||
Sbjct 3288 GATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCGTCAATCATCTG 3229
Score = 150 bits (166), Expect = 3e-31
Identities = 219/308 (71%), Gaps = 1/308 (0%)
Strand=Plus/Minus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| || | || ||||| ||||| |||||| | |||| || ||| | | ||
Sbjct 5476 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 5417
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||| || |||| ||||| ||| || |||||||| || |||||||| | ||||
Sbjct 5416 TATTGATTATTTCAAAGCCCACTCTTCCACCAAAGGTGCTCGGCTTCCAGTACTCAGGGG 5357
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
||||||| | || |||| || || || || || ||||| || || | ||| | ||
Sbjct 5356 AGCAGATAGCATTTCCCATCAGTCCCTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 5297
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| |||||||||||||| || ||||||||||| || | || || | |||| |||||
Sbjct 5296 TTTCACCGAAGATGGCACCTGGCCGGGGCTTTTCTACGAGGAGGCCTGGATACAGCTCCA 5237
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977
||| || |||||||| ||||| | ||||| || || ||||| |||||||||||
Sbjct 5236 TAGCGTCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 5177
Query 8978 TTATTAAT 8985
||||| ||
Sbjct 5176 TTATTGAT 5169
Score = 87.8 bits (96), Expect = 3e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || | || || ||||| || || || || || || | ||||
Sbjct 1515 TCACCTTTAACACCCATTGGTGTCGGACAGTCATGTCCCACTGGCGGAAGGCTTCTTGTA 1456
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
|||||||| |||||||| |||||||||||||| ||| | ||| || |||||| |
Sbjct 1455 TAATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAATTGTAATCACTGTTGTAAGTT 1396
Query 10407 GGAGGGCTGTCAATCAAATCGGATCT 10432
|| |||||||||||||| | |||||
Sbjct 1395 GGTGGGCTGTCAATCAAGTGTGATCT 1370
>seq65818
Length=2167
Score = 118 bits (130), Expect = 2e-21
Identities = 167/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669
|| ||||| | |||||| |||| ||||| || || || ||||| ||||| |||||
Sbjct 312 TCACCGATGAGGATGAGACGAGCCGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGC 253
Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729
|| |||||||| | ||||| || | |||||| || | ||||||| || ||||||||
Sbjct 252 TCCCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 193
Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789
||| || |||| ||| ||||| |||| || || | ||||| || | | | |||
Sbjct 192 CAGAGCCCCGGCAGCAGCCCAAACACCTCCTGCCCCATCGCCAGCTGCTTCTCCTTGGGG 133
Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACA 9844
|| | || |||| |||||| ||| | |||| |||| | |||||||||||
Sbjct 132 ACGGTAGATGGGTAGACCATGTGGACCAGAGCATCGGTGACTGTGGGGGGATACA 78
>seq28214
Length=2975
Score = 107 bits (118), Expect = 3e-18
Identities = 145/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
|||| || ||| |||| ||| |||||||||| || |||||||||||||| | ||||
Sbjct 2469 TCTTAACTATCTCAAAGCCCGTTGCTCCGCCGAATGTACTGGGTTTCCAGTACTCTGGGG 2528
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| || | | || || || |||||||||||||| |||| ||| | ||||
Sbjct 2529 AGCAGATGGGATTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCCATCTCCACCATGC 2588
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || || || | || || | || || || | || || || || |||||||
Sbjct 2589 TTTCCCCAAAAATACCATTAGGTTGAGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 2648
Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940
||| || |||||||| || ||
Sbjct 2649 GAGCATCAATGTCTCCATACAG 2670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 707850027550160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |