Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq66148 104 2e-17
>seq66148
Length=2144
Score = 104 bits (114), Expect = 2e-17
Identities = 153/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| || | ||| || ||||||||||| || ||||||||||||| || ||| | ||
Sbjct 688 CAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 629
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| || ||||| || | || |||| ||| || ||| ||| | ||| || |||||
Sbjct 628 TTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTC 569
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || || ||| || | | | ||||| | |||||| ||||| |||||||
Sbjct 568 CTGGATCTTGGC--CTTGACATTTTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATG 511
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || || ||||| || || ||||| ||||||||
Sbjct 510 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 476
Score = 100 bits (110), Expect = 2e-16
Identities = 154/218 (71%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| || | ||| || ||||| ||||| || ||||||||||||| || ||| | ||
Sbjct 460 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 401
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| || ||||| || | || |||| ||| || ||| ||| | ||| || |||||
Sbjct 400 TTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTC 341
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || || ||| || | | | ||||| | |||||| |||| |||||||
Sbjct 340 CTGGATCTTGGC--CTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATG 283
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938
|| || || ||||| || || ||||| |||||||||||
Sbjct 282 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATTTT 245
Score = 100 bits (110), Expect = 2e-16
Identities = 167/237 (70%), Gaps = 7/237 (3%)
Strand=Plus/Minus
Query 16702 CATTTACC-CTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760
|| ||||| | |||| || | ||| || | ||| || ||||| ||||| || |||||||
Sbjct 936 CAGTTACCACCCCTC--AGGCGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGT 879
Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820
|||||| || ||| | || |||| || ||||| || | || |||| ||| || |
Sbjct 878 AGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGAT 819
Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878
|| ||| | ||| || ||||| || || || ||| || | | | ||||| |
Sbjct 818 CCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACT 761
Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||||| ||||| ||||||||| || || ||||| || || ||||| ||||||||
Sbjct 760 GGGCTCAACTTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404711854145110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |