Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq29365 127 1e-24 seq45615 118 7e-22 seq6897 104 2e-17 seq30196 96.9 2e-15 seq64838 91.5 1e-13 seq50027 86.0 4e-12 seq61757 82.4 5e-11 >seq29365 Length=5581 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 4613 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 4554 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 4553 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 4519 >seq45615 Length=859 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 742 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 801 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||| ||||| ||||| Sbjct 802 TCATCCATTCATGCGCGTCACTACTTAGAGGACGA 836 >seq6897 Length=1202 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||| ||||||||||||||||| |||||||| | ||| || ||||| || Sbjct 904 AAGCCCGTTCCTTTGGCTGTGGTTTCGCTGGATAGTAGGTGGGGACAGTGGGAATCTTGT 963 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| ||||||||||||||||||| Sbjct 964 TCATCCATTCATGCATGTCACTAATTAGATGACGA 998 >seq30196 Length=3729 Score = 96.9 bits (106), Expect = 2e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 19953 CTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAAT 20012 |||||||||||||||||||||||||| |||||||||||| ||||| ||||||| | | | Sbjct 168 CTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATTGGTCTCGTGCTGGT 109 Query 20013 ATTTAGCCTTA 20023 ||||||||||| Sbjct 108 ATTTAGCCTTA 98 >seq64838 Length=3435 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| || ||||||||||||||||| || |||||||| ||||| || ||||| || Sbjct 1379 AAGCCTGTGCCCTTGGCTGTGGTTTCACTGGATAGTAGGTAGGGACAGTGGGAATCTTGT 1438 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| ||||||||| || ||| || Sbjct 1439 TCATCCATTCATGCGTGTCACTAATCAGGTGATGA 1473 >seq50027 Length=2005 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||| ||| | |||||| ||||| || |||||| | Sbjct 1189 AAGCCCATTCCCTTGGCTGTGGTTTTGCTGGGTAGTAGGTAGGGACAGTGGGAATCTCAT 1130 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | | || |||||| | |||| ||| |||||||||| Sbjct 1129 TCAGCCATTCATGTGTGTCAGTAAGTAGATGACGA 1095 >seq61757 Length=30183 Score = 82.4 bits (90), Expect = 5e-11 Identities = 74/93 (80%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 ||||| ||||| |||| ||||||||| || | |||||| ||||| | ||||| || Sbjct 26173 AAGCCTGTTCCTTTGGTTGTGGTTTCACTGGGTAGTAGGTAGGGACAGTAGGAATCTTGT 26232 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||||| | |||||||||||||||| Sbjct 26233 TCATCCATTCATGCACATCACTAATTAGATGAC 26265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334636183626059