Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq29365 127 1e-24
seq45615 118 7e-22
seq6897 104 2e-17
seq30196 96.9 2e-15
seq64838 91.5 1e-13
seq50027 86.0 4e-12
seq61757 82.4 5e-11
>seq29365
Length=5581
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 4613 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 4554
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 4553 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 4519
>seq45615
Length=859
Score = 118 bits (130), Expect = 7e-22
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 742 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 801
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||||||||||||| ||||| |||||
Sbjct 802 TCATCCATTCATGCGCGTCACTACTTAGAGGACGA 836
>seq6897
Length=1202
Score = 104 bits (114), Expect = 2e-17
Identities = 80/95 (84%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||| ||||||||||||||||| |||||||| | ||| || ||||| ||
Sbjct 904 AAGCCCGTTCCTTTGGCTGTGGTTTCGCTGGATAGTAGGTGGGGACAGTGGGAATCTTGT 963
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||| |||||||||||||||||||
Sbjct 964 TCATCCATTCATGCATGTCACTAATTAGATGACGA 998
>seq30196
Length=3729
Score = 96.9 bits (106), Expect = 2e-15
Identities = 64/71 (90%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 19953 CTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAAT 20012
|||||||||||||||||||||||||| |||||||||||| ||||| ||||||| | | |
Sbjct 168 CTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATTGGTCTCGTGCTGGT 109
Query 20013 ATTTAGCCTTA 20023
|||||||||||
Sbjct 108 ATTTAGCCTTA 98
>seq64838
Length=3435
Score = 91.5 bits (100), Expect = 1e-13
Identities = 77/95 (81%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||| || ||||||||||||||||| || |||||||| ||||| || ||||| ||
Sbjct 1379 AAGCCTGTGCCCTTGGCTGTGGTTTCACTGGATAGTAGGTAGGGACAGTGGGAATCTTGT 1438
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||||| ||||||||| || ||| ||
Sbjct 1439 TCATCCATTCATGCGTGTCACTAATCAGGTGATGA 1473
>seq50027
Length=2005
Score = 86.0 bits (94), Expect = 4e-12
Identities = 76/95 (80%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| |||||||||||||||||| ||| | |||||| ||||| || |||||| |
Sbjct 1189 AAGCCCATTCCCTTGGCTGTGGTTTTGCTGGGTAGTAGGTAGGGACAGTGGGAATCTCAT 1130
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| | || |||||| | |||| ||| ||||||||||
Sbjct 1129 TCAGCCATTCATGTGTGTCAGTAAGTAGATGACGA 1095
>seq61757
Length=30183
Score = 82.4 bits (90), Expect = 5e-11
Identities = 74/93 (80%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956
||||| ||||| |||| ||||||||| || | |||||| ||||| | ||||| ||
Sbjct 26173 AAGCCTGTTCCTTTGGTTGTGGTTTCACTGGGTAGTAGGTAGGGACAGTAGGAATCTTGT 26232
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
| |||| ||||||| | ||||||||||||||||
Sbjct 26233 TCATCCATTCATGCACATCACTAATTAGATGAC 26265
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334636183626059
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |