Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq23705 120 4e-22
seq29696 114 2e-20
seq35785 91.5 2e-13
>seq23705
Length=12823
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 9182 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 9123
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||||||||| | ||||| || || |||||||| || ||||| ||||| |||||||
Sbjct 9122 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 9063
Query 32803 CAATAAGTCTCTCTCC 32818
||| | |||||| ||
Sbjct 9062 CAACCACTCTCTCACC 9047
>seq29696
Length=9771
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| |||||||| || | |||||| ||||| |||||||| ||||||| || | || |
Sbjct 6809 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 6868
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| |
Sbjct 6869 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 6928
Query 32803 C 32803
|
Sbjct 6929 C 6929
>seq35785
Length=10255
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/147 (75%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130
||||| ||||| ||||||||||||||||| || || | || || ||||||| || ||
Sbjct 8434 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 8375
Query 63131 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189
|| || || || || ||||| |||||| || || ||| | | || || ||||||| ||
Sbjct 8374 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8316
Query 63190 TTCCAAGTATATGGCCATAACTCCAGG 63216
|||| ||| ||||| | | | |||||
Sbjct 8315 CTCCAGGTAGATGGCAAAAGCCCCAGG 8289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633028552644400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |