Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq59062 174 2e-38
seq28214 105 1e-17
seq65818 86.0 9e-12
>seq59062
Length=24493
Score = 174 bits (192), Expect = 2e-38
Identities = 182/239 (76%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 9730 AGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACA 9789
|| ||||| ||||| |||| |||||||||| |||| ||||| || || ||||| || |
Sbjct 3467 AGTCGAGTAGTTTGGAACAGCTGCTCGTCATCCCACTCCGGATGCTCCTGTTTCAGGATG 3408
Query 9790 TCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACT 9849
|| ||||| | ||||||||| ||||||||||| || ||||||||||| || ||||| ||
Sbjct 3407 TCACAGACTCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCCGGGACC 3348
Query 9850 AAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATAC 9909
||||||||||| || | |||||| | ||| | || | || ||||| | || | ||
Sbjct 3347 AAACCAAACACCTCCTGCCCCACAGAAAACTGGAGGTGTTCAGGCACGTGAGGAGGGTAG 3288
Query 9910 AGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968
| ||| | |||| || || || || || || ||||||||||| |||||||| | |||
Sbjct 3287 ATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCGTCAATCATCTG 3229
Score = 138 bits (152), Expect = 2e-27
Identities = 208/296 (70%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
|||| || | || ||||| || ||||| ||| || ||||| ||| | || ||||
Sbjct 5476 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 5417
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || | || || || || || || || |||||||| || ||||||||| | ||||
Sbjct 5416 TATTGATTATTTCAAAGCCCACTCTTCCACCAAAGGTGCTCGGCTTCCAGTACTCAGGGG 5357
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
||||||| | || |||| || || |||| || ||||| || || | ||| | ||
Sbjct 5356 AGCAGATAGCATTTCCCATCAGTCCCTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 5297
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
| ||||||||||||||||| || || || ||||| |||| || ||| | || || || |
Sbjct 5296 TTTCACCGAAGATGGCACCTGGCCGGGGCTTTTCTACGAGGAGGCCTGGATACAGCTCCA 5237
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
||| || | ||| ||||| || |||||| || || || || || || || |||
Sbjct 5236 TAGCGTCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 5181
Score = 102 bits (112), Expect = 1e-16
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552
||||| |||||||| | ||| || | | || |||| | |||| || | ||
Sbjct 4667 ATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCGTGGATCTGGAACGTG 4608
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
||||||| || | |||||| ||||||| |||||||| ||||| || ||||||||||||
Sbjct 4607 TCAGGCAGAAGTGGGTGCCAGTGGTAGAGAGTATTGAATTCGGCTGCAATTCGGTTCTGG 4548
Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670
|| ||||| | ||| |||||| | ||| || || || | || | ||||||||| |
Sbjct 4547 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCGAACTTGAGTTTGAAGTGGTAGC 4490
Query 9671 CGCTGAGTTGCTGGACATA 9689
|||| | ||||| |||||
Sbjct 4489 CGCTCAAGTGCTGCACATA 4471
>seq28214
Length=2975
Score = 105 bits (116), Expect = 1e-17
Identities = 192/279 (69%), Gaps = 4/279 (1%)
Strand=Plus/Plus
Query 8902 CTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTAC 8961
|||||||||| || | ||| || | | ||| || || || || || || || |
Sbjct 2431 CTTCACATTGAGGCACACGAGCTTCTCGAGCGATGCTGTCTTAACTATCTCAAAGCC--C 2488
Query 8962 GT--CCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATG 9019
|| | |||||||| || ||||||||||||||| | |||||||||||| || | |
Sbjct 2489 GTTGCTCCGCCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGATTTCCAAGA 2548
Query 9020 AGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCG 9079
||||| |||| |||||||||||| |||| ||| | ||||| || || || || ||
Sbjct 2549 AGCCCCTTCAGGGAAAACGGAGCTCCCATCTCCACCATGCTTTCCCCAAAAATACCATTA 2608
Query 9080 GGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAG 9139
|| | ||||| || | | ||||| || | || | ||| || | ||| |||||
Sbjct 2609 GGTTGAGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATAC 2668
Query 9140 AGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178
|| |||||| ||| || || |||| | ||| ||| ||
Sbjct 2669 AGCTCTTCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 2707
>seq65818
Length=2167
Score = 86.0 bits (94), Expect = 9e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAGGCGGTA 9627
|||||| | ||||| |||||||| | || || || ||| ||||||| || | ||
Sbjct 1159 TGCCAGTGATAGAGCTGGTTGAACTCCACTGCGATGCGATTCCGGTACTGGAACGGCGTC 1100
Query 9628 CCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACA 9687
|| ||||| | ||| |||||||| | || | || |||||||||||| |||||||||
Sbjct 1099 CCAAACAGCAGCTCGGGGTCAAACTTGAGGCTCAGGTAGTACCCGCTGAGGTGCTGGACA 1040
Query 9688 TACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
|| | | || | || |||||||| |||||
Sbjct 1039 TAGTCTTCAATGACGATCTTAATGGTCTCCCC 1008
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723038748592600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |