Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq59062 174 2e-38 seq28214 105 1e-17 seq65818 86.0 9e-12 >seq59062 Length=24493 Score = 174 bits (192), Expect = 2e-38 Identities = 182/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 9730 AGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACA 9789 || ||||| ||||| |||| |||||||||| |||| ||||| || || ||||| || | Sbjct 3467 AGTCGAGTAGTTTGGAACAGCTGCTCGTCATCCCACTCCGGATGCTCCTGTTTCAGGATG 3408 Query 9790 TCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACT 9849 || ||||| | ||||||||| ||||||||||| || ||||||||||| || ||||| || Sbjct 3407 TCACAGACTCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCCGGGACC 3348 Query 9850 AAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATAC 9909 ||||||||||| || | |||||| | ||| | || | || ||||| | || | || Sbjct 3347 AAACCAAACACCTCCTGCCCCACAGAAAACTGGAGGTGTTCAGGCACGTGAGGAGGGTAG 3288 Query 9910 AGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | ||| | |||| || || || || || || ||||||||||| |||||||| | ||| Sbjct 3287 ATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCGTCAATCATCTG 3229 Score = 138 bits (152), Expect = 2e-27 Identities = 208/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||| ||| || ||||| ||| | || |||| Sbjct 5476 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 5417 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || || || |||||||| || ||||||||| | |||| Sbjct 5416 TATTGATTATTTCAAAGCCCACTCTTCCACCAAAGGTGCTCGGCTTCCAGTACTCAGGGG 5357 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || || |||| || ||||| || || | ||| | || Sbjct 5356 AGCAGATAGCATTTCCCATCAGTCCCTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 5297 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||||||||||||||| || || || ||||| |||| || ||| | || || || | Sbjct 5296 TTTCACCGAAGATGGCACCTGGCCGGGGCTTTTCTACGAGGAGGCCTGGATACAGCTCCA 5237 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 5236 TAGCGTCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 5181 Score = 102 bits (112), Expect = 1e-16 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 ||||| |||||||| | ||| || | | || |||| | |||| || | || Sbjct 4667 ATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCGTGGATCTGGAACGTG 4608 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| ||||||| |||||||| ||||| || |||||||||||| Sbjct 4607 TCAGGCAGAAGTGGGTGCCAGTGGTAGAGAGTATTGAATTCGGCTGCAATTCGGTTCTGG 4548 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || || || | || | ||||||||| | Sbjct 4547 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCGAACTTGAGTTTGAAGTGGTAGC 4490 Query 9671 CGCTGAGTTGCTGGACATA 9689 |||| | ||||| ||||| Sbjct 4489 CGCTCAAGTGCTGCACATA 4471 >seq28214 Length=2975 Score = 105 bits (116), Expect = 1e-17 Identities = 192/279 (69%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 8902 CTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTAC 8961 |||||||||| || | ||| || | | ||| || || || || || || || | Sbjct 2431 CTTCACATTGAGGCACACGAGCTTCTCGAGCGATGCTGTCTTAACTATCTCAAAGCC--C 2488 Query 8962 GT--CCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATG 9019 || | |||||||| || ||||||||||||||| | |||||||||||| || | | Sbjct 2489 GTTGCTCCGCCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGATTTCCAAGA 2548 Query 9020 AGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCG 9079 ||||| |||| |||||||||||| |||| ||| | ||||| || || || || || Sbjct 2549 AGCCCCTTCAGGGAAAACGGAGCTCCCATCTCCACCATGCTTTCCCCAAAAATACCATTA 2608 Query 9080 GGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAG 9139 || | ||||| || | | ||||| || | || | ||| || | ||| ||||| Sbjct 2609 GGTTGAGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATAC 2668 Query 9140 AGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 || |||||| ||| || || |||| | ||| ||| || Sbjct 2669 AGCTCTTCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 2707 >seq65818 Length=2167 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAGGCGGTA 9627 |||||| | ||||| |||||||| | || || || ||| ||||||| || | || Sbjct 1159 TGCCAGTGATAGAGCTGGTTGAACTCCACTGCGATGCGATTCCGGTACTGGAACGGCGTC 1100 Query 9628 CCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACA 9687 || ||||| | ||| |||||||| | || | || |||||||||||| ||||||||| Sbjct 1099 CCAAACAGCAGCTCGGGGTCAAACTTGAGGCTCAGGTAGTACCCGCTGAGGTGCTGGACA 1040 Query 9688 TACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 || | | || | || |||||||| ||||| Sbjct 1039 TAGTCTTCAATGACGATCTTAATGGTCTCCCC 1008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723038748592600