Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq62365 318 7e-82 seq5077 205 1e-47 >seq62365 Length=2392 Score = 318 bits (352), Expect = 7e-82 Identities = 1043/1601 (65%), Gaps = 40/1601 (2%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || || || ||||| ||||| |||||||| || || | Sbjct 740 TTCATCCTCCGCTTTGTATTTCTCTGCTTCTTGCACCATACGGTCAATGTCATCCTT-GC 798 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | ||||| || || || || || ||||| | ||||||| | ||| || Sbjct 799 TAAGGCGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCA 858 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 ||||||| ||||||| |||||||| ||||| | || || | || | || || || Sbjct 859 CAGCACTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGA 918 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 || | ||||| | || || ||||||| ||||| | || || || |||| ||| Sbjct 919 CTCCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCT 978 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGT 6865 ||| | | | || || || || || | | || || | | || || ||| Sbjct 979 TCGTCATGGCCCTCTCGCCCTCGTACACCTGCACCAGGAC-GCTGCTCTGGTTGTCTGAG 1037 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 || | |||| | || || || | ||||| || || || | | || | | | Sbjct 1038 TAGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCG 1097 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | ||||| || |||| || || |||||||| || || ||||| || | | Sbjct 1098 GTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGC 1157 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || || || ||| || | || ||| | | ||| || ||||| || | || || Sbjct 1158 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCACCA 1217 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||||||||| || | || || || ||||| || || || | ||| Sbjct 1218 TAAGCAACGGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 1277 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || || | ||| || || ||||| || || || ||||| |||| || || || | Sbjct 1278 TGTAGCAGCTTTTGGATCTTGGGGATACGGGTAGAGCCACCCACCAGCACAATCTCCTGG 1337 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 | | ||||| | ||| | || || || | || || || || |||| | | Sbjct 1338 ATCTGGCCCTTATCTAGCTTGGCATCACGCAGAGCCTTCTCCACCGGCTCCAGAGTGCCA 1397 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | || | || ||||| || || ||||| |||||||| || ||||| ||| Sbjct 1398 CGGAAGAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGTAATGGAGGTGTAGAAGTCA 1457 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAACGTT 7342 | ||| ||||| | ||||| || |||||| | | |||| || ||||| | || Sbjct 1458 ATGCCCTCGTAGAGGGAATCGATCTCAATGCTAGCTTGT---GTGGAAGAGCTGAGAGTG 1514 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 ||||| || | |||||| ||||| || | || | | || ||| ||| || | ||| Sbjct 1515 CGCTTCGCCCTCTCACAAGCCGTACGCAGTCGCCTCACTGCTCGCTTGTTGCCAGCAATG 1574 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGA--AGGAGTCTCGAATCG 7459 || ||| || ||||| || || |||| || | || || | | | | | || Sbjct 1575 TCGCGCTTGTGCTTACGCTTGAATTCTTCCACAAAATGGTTCACCATGCGGTT---GTCA 1631 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||| || || || || || || | || || |||||||| || | Sbjct 1632 AAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCATCC 1691 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| | | | || |||||||| ||||| || |||| |||||| ||||| || || Sbjct 1692 TCAATGGTAAGGATGGACACATCAAAAGTACCCCCTCCCAAGTCAAAGATGAGCACATTT 1751 Query 7580 GTATCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | || | | | ||||| || | || || || ||||| || ||||| || Sbjct 1752 TTCTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCCGTGGGC 1811 Query 7634 TCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || |||||||| | ||| || ||||||| || || | |||||||| || || || Sbjct 1812 TCGTTGATAATACGCATCACA-TTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTG 1870 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || || || || |||||||| || || || | ||| || | | ||||| || Sbjct 1871 GCGCTGGGAGTCATTGAAGTAGGCAGGCACTGTGATGACAGCATTCTGCACTTTGCGCCC 1930 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 ||||| | || || || || ||||| |||||||| ||||| || ||||| || | Sbjct 1931 CAGATAGGCCTCAGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCTG- 1989 Query 7813 CGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC 7871 | | | || ||| | ||||| || | || |||| | | |||| || || ||| Sbjct 1990 GGAAGAAGGTCTTCATCTCACCCTTGTACTCCACTTGCACCTTGGGCTT----GC--CAC 2043 Query 7872 CGGGGATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAA 7928 | | ||| | | | ||| | ||||| || | || ||| |||| | Sbjct 2044 CCTCATTCACCACACGGAAGGGCCAGTGCTTCATGTCAGCCTGCACCGTGGGGTCATCAT 2103 Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 |||| | ||||| |||||||| |||||||| | ||||| | |||||||| || | Sbjct 2104 ACTTGCGGCCGATGAGACGCTTGGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACCT 2163 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 ||||||| || ||||| || || || || || || || || || || || || | || Sbjct 2164 GGTTCTTGGCAGCGTCACCAATGAGGCGCTCTGTA---TCGGTGAAGGCCACATA-GCTG 2219 Query 8049 GG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || || || || || |||||||| || || || || || | | | || |||| Sbjct 2220 GGTGTGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACA 2279 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || ||||| || ||||| || || || || || |||||||| Sbjct 2280 CCCACGCAGGAGTACGTGGTGCCCAAGTCGATGCCGATTGC 2320 >seq5077 Length=15507 Score = 205 bits (226), Expect = 1e-47 Identities = 373/543 (69%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || ||||| ||||| ||||| || Sbjct 1981 GCACCATAAGCTACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCGTTGAAG 1922 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || | ||||| || ||||| || || || ||||| |||| || || Sbjct 1921 AAATCCTGAAGCAGCTTCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCACAATG 1862 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | |||||| |||| |||| || || || | ||||| ||||| |||| Sbjct 1861 TCATGGATCTGCGATTTGTCGAGTTTTGCATCCCGGAGGGCCTTTTCCACAGGATCCAGG 1802 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| ||| || ||||| || || | |||||||||||| ||| Sbjct 1801 GTGCCACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTGTAG 1742 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | |||||||||||||| | | || | | || || | Sbjct 1741 AAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGACGACAGA 1682 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| ||||| || || || || | ||||||| || | | ||| || Sbjct 1681 GTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCTCGCTG 1622 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 || ||||||||||| || || || || || || ||||| || || | | | | Sbjct 1621 ATGTCTTTCTTATGCTTGCGCTTGAATTCGGCAATGAAGTGGTTGACCATGCGGTT---G 1565 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||||||| || || || || || | ||| || |||||||| || Sbjct 1564 TCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCA 1505 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | || |||||||| || ||||| || |||||||| || || || Sbjct 1504 TCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAGAACA 1445 Query 7577 TTC 7579 ||| Sbjct 1444 TTC 1442 Score = 86.0 bits (94), Expect = 8e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 ||||| ||||| || ||||| ||||| | || || | |||||| ||||| Sbjct 3032 CCCTTGTCATTTGTTATCGTGATCTTGTTCTCCTTGCCAGTACTCTTATCCACAGCAGAC 2973 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 ||||||| || ||||| ||||||| ||| || |||| | ||| || ||| ||| || Sbjct 2972 ACATTCAGGATGCCATTGGCATCAATATCAAAGGTTACTTCAATCTGAGGTACACCTCTG 2913 Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814 || || | ||||||||||| | ||||| | || || || |||| ||| | | | | Sbjct 2912 GGAGCAGGGGGAATACCCGTCAGCTCAAACTTGCCCAGCAAGTTGTTGTCCTTAGTCATA 2853 Query 6815 TTACGTTCACCTTCATAGAC 6834 |||||| |||||||| || Sbjct 2852 GCACGTTCTCCTTCATATAC 2833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634527923338760