Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq62365 318 7e-82
seq5077 205 1e-47
>seq62365
Length=2392
Score = 318 bits (352), Expect = 7e-82
Identities = 1043/1601 (65%), Gaps = 40/1601 (2%)
Strand=Plus/Plus
Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627
|||||| || |||| || || || || ||||| ||||| |||||||| || || |
Sbjct 740 TTCATCCTCCGCTTTGTATTTCTCTGCTTCTTGCACCATACGGTCAATGTCATCCTT-GC 798
Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686
||| | ||||| || || || || || ||||| | ||||||| | ||| ||
Sbjct 799 TAAGGCGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCA 858
Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746
||||||| ||||||| |||||||| ||||| | || || | || | || || ||
Sbjct 859 CAGCACTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGA 918
Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806
|| | ||||| | || || ||||||| ||||| | || || || |||| |||
Sbjct 919 CTCCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCT 978
Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGT 6865
||| | | | || || || || || | | || || | | || || |||
Sbjct 979 TCGTCATGGCCCTCTCGCCCTCGTACACCTGCACCAGGAC-GCTGCTCTGGTTGTCTGAG 1037
Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925
|| | |||| | || || || | ||||| || || || | | || | | |
Sbjct 1038 TAGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCG 1097
Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985
||||| | ||||| || |||| || || |||||||| || || ||||| || | |
Sbjct 1098 GTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGC 1157
Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045
|| || || ||| || | || ||| | | ||| || ||||| || | || ||
Sbjct 1158 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCACCA 1217
Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105
|| || || |||||||||||||| || | || || || ||||| || || || | |||
Sbjct 1218 TAAGCAACGGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 1277
Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165
|| || | ||| || || ||||| || || || ||||| |||| || || || |
Sbjct 1278 TGTAGCAGCTTTTGGATCTTGGGGATACGGGTAGAGCCACCCACCAGCACAATCTCCTGG 1337
Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225
| | ||||| | ||| | || || || | || || || || |||| | |
Sbjct 1338 ATCTGGCCCTTATCTAGCTTGGCATCACGCAGAGCCTTCTCCACCGGCTCCAGAGTGCCA 1397
Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285
||||| | || | || ||||| || || ||||| |||||||| || ||||| |||
Sbjct 1398 CGGAAGAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGTAATGGAGGTGTAGAAGTCA 1457
Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAACGTT 7342
| ||| ||||| | ||||| || |||||| | | |||| || ||||| | ||
Sbjct 1458 ATGCCCTCGTAGAGGGAATCGATCTCAATGCTAGCTTGT---GTGGAAGAGCTGAGAGTG 1514
Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402
||||| || | |||||| ||||| || | || | | || ||| ||| || | |||
Sbjct 1515 CGCTTCGCCCTCTCACAAGCCGTACGCAGTCGCCTCACTGCTCGCTTGTTGCCAGCAATG 1574
Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGA--AGGAGTCTCGAATCG 7459
|| ||| || ||||| || || |||| || | || || | | | | | ||
Sbjct 1575 TCGCGCTTGTGCTTACGCTTGAATTCTTCCACAAAATGGTTCACCATGCGGTT---GTCA 1631
Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519
|| || || ||||||| || || || || || || | || || |||||||| || |
Sbjct 1632 AAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCATCC 1691
Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579
|||||| | | | || |||||||| ||||| || |||| |||||| ||||| || ||
Sbjct 1692 TCAATGGTAAGGATGGACACATCAAAAGTACCCCCTCCCAAGTCAAAGATGAGCACATTT 1751
Query 7580 GTATCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633
| || | | | ||||| || | || || || ||||| || ||||| ||
Sbjct 1752 TTCTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCCGTGGGC 1811
Query 7634 TCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692
|| || |||||||| | ||| || ||||||| || || | |||||||| || || ||
Sbjct 1812 TCGTTGATAATACGCATCACA-TTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTG 1870
Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752
|| || || || || |||||||| || || || | ||| || | | ||||| ||
Sbjct 1871 GCGCTGGGAGTCATTGAAGTAGGCAGGCACTGTGATGACAGCATTCTGCACTTTGCGCCC 1930
Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812
||||| | || || || || ||||| |||||||| ||||| || ||||| || |
Sbjct 1931 CAGATAGGCCTCAGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCTG- 1989
Query 7813 CGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC 7871
| | | || ||| | ||||| || | || |||| | | |||| || || |||
Sbjct 1990 GGAAGAAGGTCTTCATCTCACCCTTGTACTCCACTTGCACCTTGGGCTT----GC--CAC 2043
Query 7872 CGGGGATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAA 7928
| | ||| | | | ||| | ||||| || | || ||| |||| |
Sbjct 2044 CCTCATTCACCACACGGAAGGGCCAGTGCTTCATGTCAGCCTGCACCGTGGGGTCATCAT 2103
Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988
|||| | ||||| |||||||| |||||||| | ||||| | |||||||| || |
Sbjct 2104 ACTTGCGGCCGATGAGACGCTTGGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACCT 2163
Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048
||||||| || ||||| || || || || || || || || || || || || | ||
Sbjct 2164 GGTTCTTGGCAGCGTCACCAATGAGGCGCTCTGTA---TCGGTGAAGGCCACATA-GCTG 2219
Query 8049 GG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107
|| || || || || || |||||||| || || || || || | | | || ||||
Sbjct 2220 GGTGTGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACA 2279
Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148
|| ||||| || ||||| || || || || || ||||||||
Sbjct 2280 CCCACGCAGGAGTACGTGGTGCCCAAGTCGATGCCGATTGC 2320
>seq5077
Length=15507
Score = 205 bits (226), Expect = 1e-47
Identities = 373/543 (69%), Gaps = 6/543 (1%)
Strand=Plus/Minus
Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099
|| || || || || || ||||| || || || | || ||||| ||||| ||||| ||
Sbjct 1981 GCACCATAAGCTACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCGTTGAAG 1922
Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159
||||| | || | ||||| || ||||| || || || ||||| |||| || ||
Sbjct 1921 AAATCCTGAAGCAGCTTCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCACAATG 1862
Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219
|||| | | |||||| |||| |||| || || || | ||||| ||||| ||||
Sbjct 1861 TCATGGATCTGCGATTTGTCGAGTTTTGCATCCCGGAGGGCCTTTTCCACAGGATCCAGG 1802
Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279
|||||||| ||| ||| || ||||| || || | |||||||||||| |||
Sbjct 1801 GTGCCACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTGTAG 1742
Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339
|| |||| || || || | |||||||||||||| | | || | | || || |
Sbjct 1741 AAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGACGACAGA 1682
Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399
|| |||||||| ||||| || || || || | ||||||| || | | ||| ||
Sbjct 1681 GTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCTCGCTG 1622
Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456
|| ||||||||||| || || || || || || ||||| || || | | | |
Sbjct 1621 ATGTCTTTCTTATGCTTGCGCTTGAATTCGGCAATGAAGTGGTTGACCATGCGGTT---G 1565
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || ||||| ||||||||||| || || || || || | ||| || |||||||| ||
Sbjct 1564 TCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCA 1505
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
||||||| | | | || |||||||| || ||||| || |||||||| || || ||
Sbjct 1504 TCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAGAACA 1445
Query 7577 TTC 7579
|||
Sbjct 1444 TTC 1442
Score = 86.0 bits (94), Expect = 8e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694
||||| ||||| || ||||| ||||| | || || | |||||| |||||
Sbjct 3032 CCCTTGTCATTTGTTATCGTGATCTTGTTCTCCTTGCCAGTACTCTTATCCACAGCAGAC 2973
Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754
||||||| || ||||| ||||||| ||| || |||| | ||| || ||| ||| ||
Sbjct 2972 ACATTCAGGATGCCATTGGCATCAATATCAAAGGTTACTTCAATCTGAGGTACACCTCTG 2913
Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814
|| || | ||||||||||| | ||||| | || || || |||| ||| | | | |
Sbjct 2912 GGAGCAGGGGGAATACCCGTCAGCTCAAACTTGCCCAGCAAGTTGTTGTCCTTAGTCATA 2853
Query 6815 TTACGTTCACCTTCATAGAC 6834
|||||| |||||||| ||
Sbjct 2852 GCACGTTCTCCTTCATATAC 2833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634527923338760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |