Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq66148 140 7e-28
seq38623 84.2 5e-11
>seq66148
Length=2144
Score = 140 bits (154), Expect = 7e-28
Identities = 159/212 (75%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| ||||| ||||| || || || || ||||| |||| || || | |||||||||
Sbjct 912 ACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 853
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || | || || || |||||||||||||| ||||| ||
Sbjct 852 AGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGG 793
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || |||||| |||||||||||||| ||| || ||||| ||||| | |||
Sbjct 792 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATGGTC 736
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || || || | |||||
Sbjct 735 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 704
Score = 136 bits (150), Expect = 9e-27
Identities = 158/212 (75%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || || |||||||| || || || ||||| |||| || || | |||||||||
Sbjct 684 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 625
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || | || || || |||||||||||||| ||||| ||
Sbjct 624 AGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGG 565
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || |||||| || ||||||||||| ||| || ||||| ||||| | |||
Sbjct 564 ATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATGGTC 508
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || || || | |||||
Sbjct 507 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 476
Score = 131 bits (144), Expect = 4e-25
Identities = 158/214 (74%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || || ||||| || || || || ||||| |||| || || | |||||||||
Sbjct 456 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 397
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || | || || || |||||||||||||| ||||| ||
Sbjct 396 AGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGG 337
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || |||||| || ||||||||||| ||| || || || | ||| | |||
Sbjct 336 ATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCAACCTCCAAGGTGATGGTC 280
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
|| ||||||| || || || || | |||||||
Sbjct 279 TTGCCTGTCAGGGTCTTCACAAAGATCTGCATTT 246
>seq38623
Length=13507
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010
|||||||||||||||| || | || || | |||||||| ||||||||||| || || |
Sbjct 13124 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 13183
Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
| ||||| || || || ||||||||||||
Sbjct 13184 TCAGTCGCTGCTGATCAGGAGGAATGCCT 13212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1108398555612963
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |