Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq66148 116 2e-21 >seq66148 Length=2144 Score = 116 bits (128), Expect = 2e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || || ||||||| | || || | |||| ||| ||| ||||| ||||| ||||| Sbjct 933 TTACCACCCCTCAGGCGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCG 874 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || ||| | || |||| |||||||| || ||||| || || || | ||||| || | Sbjct 873 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGA 814 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCT 34929 || | || |||||||| ||||| ||||| || || || | |||| || || Sbjct 813 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCT 756 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || | ||| ||||| || ||||| || |||||||||||||||||||| Sbjct 755 CAACTTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 704 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || ||||| || Sbjct 666 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAG 607 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | || |||||||| ||||| ||||| | Sbjct 606 ATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTT 547 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || |||||| || | ||| ||||| || ||||| || ||||||||| Sbjct 546 TCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACA 487 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 486 AAGATCTGCAT 476 Score = 109 bits (120), Expect = 4e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || ||||| || Sbjct 439 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAA 380 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | || |||||||| ||||| ||||| Sbjct 379 GATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 320 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | |||| || |||||| || | ||| ||||| || || || || |||||||| Sbjct 319 TTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCAC 260 Query 34970 AAAGATCTGCATATT 34984 |||||||||||| || Sbjct 259 AAAGATCTGCATTTT 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324332160354792