Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq5077 140 3e-27
>seq5077
Length=15507
Score = 140 bits (154), Expect = 3e-27
Identities = 119/147 (81%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| |||| ||| | ||||||||||| ||||| |||||||| || ||||| |||||
Sbjct 1176 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 1235
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||||||| |||||| || || ||||| || || ||||||||||| || || |||
Sbjct 1236 AAAGATGCTGGAACTATTGCAGGGCTCAATGTGCTGCGAATTATCAATGAGCCAACAGCT 1295
Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537
|||||| | || ||||| || || |||
Sbjct 1296 GCTGCAATCGCTTATGGGCTGGACAAA 1322
Score = 86.0 bits (94), Expect = 5e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|||||||| |||||||| | || ||||| || |||||||| || || ||||| ||||||
Sbjct 2896 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 2955
Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598
||||| || |||||||| ||||| |||||
Sbjct 2956 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 2987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4025266782067610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |