Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq5077 100 2e-15
seq45871 89.7 3e-12
seq66148 87.8 1e-11
>seq5077
Length=15507
Score = 100 bits (110), Expect = 2e-15
Identities = 222/328 (68%), Gaps = 4/328 (1%)
Strand=Plus/Plus
Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555
||||| || || ||||| ||||| |||| || ||| || || | | | ||||| ||
Sbjct 1656 ACTGCATGCGAGCGTGCAAAGCGTACTCTGTCGTCTAGCACGCAGGCCAGTATTGAAATT 1715
Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615
|||||||| | ||| || ||||| | | || ||||| || ||| ||||||||
Sbjct 1716 GATTCTCTCTATGAGGGTATTGACTTCTACACATCCATTACCAGAGCTCGCTTTGAAGAG 1775
Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675
| |||| || || | || | || || || ||| | | ||| | ||| |
Sbjct 1776 CTGAACGCTGACCTGTTCCGTGGCACCCTGGATCCTGTGGAAAAGGCCCTCCGGGATGCA 1835
Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735
||||| |||||||| || ||||||| ||||| || || || || || || | || |||
Sbjct 1836 AAACTCGACAAATCGCAGATCCATGACATTGTGCTGGTTGGTGGGTCTACTCGTATCCCA 1895
Query 475736 AAAATAAGAGAAA-TGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAA 475793
|| || |||| ||||| || || | || || || ||| || | || | || | |
Sbjct 1896 AAGATTC-AGAAGCTGCTT-CAGGATTTCTTCAACGGCAAAGAGCTGAACAAGAGCATCA 1953
Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821
|||||||||||||||| || ||||| ||
Sbjct 1954 ATCCTGATGAAGCTGTAGCTTATGGTGC 1981
Score = 100 bits (110), Expect = 2e-15
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
|||||||| |||||||||||||| || ||||| |||||||| || ||||||||||||||
Sbjct 2896 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 2955
Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACT 476209
||||| || || ||||| ||||| ||||| || | |||| || || || ||
Sbjct 2956 AATGGCATCCTGAATGTGTCTGCTGTGGATAAGAGTACTGGCAAGGAGAACAAGATCACG 3015
Query 476210 ATTACAAA 476217
|| |||||
Sbjct 3016 ATAACAAA 3023
>seq45871
Length=43304
Score = 89.7 bits (98), Expect = 3e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828
|||||||| || ||||| || |||||||||||||| ||| || | ||||| || |||
Sbjct 17766 CCATCACGACCAGCTCTCCCAATTTCTTGATAATACGATTCCATTTCCTTAGGGGCACCA 17825
Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888
||||| || || | | ||||| |||||| || |||||||||||||| | ||| ||
Sbjct 17826 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAATGCCACTGTAGCC 17885
Query 627889 AC 627890
||
Sbjct 17886 AC 17887
>seq66148
Length=2144
Score = 87.8 bits (96), Expect = 1e-11
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| || ||||| || || || || || | || ||||| |||||||| ||||||||
Sbjct 631 ATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTT 572
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||| || ||||| |||||| |||||| || ||| || | | ||| ||||| ||
Sbjct 571 GTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGAT 512
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || ||||| || || || ||
Sbjct 511 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTG 479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3264911084120972
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |