Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5077 100 2e-15 seq45871 89.7 3e-12 seq66148 87.8 1e-11 >seq5077 Length=15507 Score = 100 bits (110), Expect = 2e-15 Identities = 222/328 (68%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||| || || ||||| ||||| |||| || ||| || || | | | ||||| || Sbjct 1656 ACTGCATGCGAGCGTGCAAAGCGTACTCTGTCGTCTAGCACGCAGGCCAGTATTGAAATT 1715 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||| | | || ||||| || ||| |||||||| Sbjct 1716 GATTCTCTCTATGAGGGTATTGACTTCTACACATCCATTACCAGAGCTCGCTTTGAAGAG 1775 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | |||| || || | || | || || || ||| | | ||| | ||| | Sbjct 1776 CTGAACGCTGACCTGTTCCGTGGCACCCTGGATCCTGTGGAAAAGGCCCTCCGGGATGCA 1835 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| |||||||| || ||||||| ||||| || || || || || || | || ||| Sbjct 1836 AAACTCGACAAATCGCAGATCCATGACATTGTGCTGGTTGGTGGGTCTACTCGTATCCCA 1895 Query 475736 AAAATAAGAGAAA-TGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAA 475793 || || |||| ||||| || || | || || || ||| || | || | || | | Sbjct 1896 AAGATTC-AGAAGCTGCTT-CAGGATTTCTTCAACGGCAAAGAGCTGAACAAGAGCATCA 1953 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||||||||| || ||||| || Sbjct 1954 ATCCTGATGAAGCTGTAGCTTATGGTGC 1981 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 2896 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 2955 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACT 476209 ||||| || || ||||| ||||| ||||| || | |||| || || || || Sbjct 2956 AATGGCATCCTGAATGTGTCTGCTGTGGATAAGAGTACTGGCAAGGAGAACAAGATCACG 3015 Query 476210 ATTACAAA 476217 || ||||| Sbjct 3016 ATAACAAA 3023 >seq45871 Length=43304 Score = 89.7 bits (98), Expect = 3e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || |||||||||||||| ||| || | ||||| || ||| Sbjct 17766 CCATCACGACCAGCTCTCCCAATTTCTTGATAATACGATTCCATTTCCTTAGGGGCACCA 17825 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || || | | ||||| |||||| || |||||||||||||| | ||| || Sbjct 17826 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAATGCCACTGTAGCC 17885 Query 627889 AC 627890 || Sbjct 17886 AC 17887 >seq66148 Length=2144 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| || || || || || | || ||||| |||||||| |||||||| Sbjct 631 ATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTT 572 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| |||||| |||||| || ||| || | | ||| ||||| || Sbjct 571 GTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGAT 512 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || || Sbjct 511 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTG 479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3264911084120972