Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq53598 255 7e-63 seq2837 134 2e-26 >seq53598 Length=28275 Score = 255 bits (282), Expect = 7e-63 Identities = 654/990 (66%), Gaps = 7/990 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || |||||| || ||| || | Sbjct 18240 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 18299 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| ||| || | Sbjct 18300 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCTACCCCAAAAA 18356 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || || || |||| || ||||| | || ||||| | || || Sbjct 18357 CACAGACAGAGCGAACATGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACATGT 18416 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||||||||||||||| | || | |||||| || ||||| Sbjct 18417 CACCTTCAAAGTACTGCCACTTCACAAACCTGGCCAGTGCGTTCATGTCAGAAACGTCGT 18476 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| | | ||| |||| || || | || || | ||| | || ||||||| Sbjct 18477 ACTTGTTACTAGAAGAAACTCCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCACA 18536 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCG-ATTAACCTG 160403 ||| || || |||||||| ||||| || | ||| || ||||||| || | ||| ||| Sbjct 18537 GGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACT-TCAGTATTTTGCTG 18595 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | || || | |||| | || ||||| || || || || || || Sbjct 18596 CTTTCTAATATGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAC 18655 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | |||||| || ||||| | || | Sbjct 18656 ATTGGAGTACTAAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTATTTTACCATCA 18715 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || |||| |||||||| ||| || | ||||| ||| || || Sbjct 18716 ATAATCTCATGGTGCTTTTTCCACCTTACCTCTTTATAAACAGGCATTTTTTCTGTTTCC 18775 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| || | || || || || |||| ||||| | Sbjct 18776 AAGCTGTTTTCACCTTTAAGGGCTTTGAGTTTCTCTACTATTTCCTGGTTGGTCTTTATA 18835 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | |||||| | ||| ||||| || | || || || Sbjct 18836 GGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGA 18895 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| | |||||| ||||| ||||| || ||||| Sbjct 18896 TCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATACACAACACTCTCT 18955 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 18956 AACTGGCTGGAAATAAAGACATTATCAAAACATGAAACTATTCCCTTCACAG-CAGCAAA 19014 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| ||| || || | ||| || | |||||||| || ||||| Sbjct 19015 AAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 19074 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || ||||| || || Sbjct 19075 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACAATTGAGTAAGCAAT 19134 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 ||||| || | || ||| || || | | | | ||| || | ||||| | || Sbjct 19135 TGGAAATTCTGCTTCTTCGTTGCTGAGAGGTTCCATAATGTATTTCCTAGTCTTAGTGAA 19194 Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032 || |||| || |||||||| ||||| Sbjct 19195 GTAGGCACAGTCTGCTGTCATGTTAATATA 19224 >seq2837 Length=1096 Score = 134 bits (148), Expect = 2e-26 Identities = 206/293 (70%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 |||||| || || || || || |||||| | ||| || | |||| ||||||| || Sbjct 2 GTCGAACTTGTTGGCTAAGAGGTGGTGA---TGCTGGAGCAGCCAGGGCACGTCGCCCAC 58 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 |||| | | ||||||||| || |||| |||| |||| |||||||| | || || || Sbjct 59 CCCGTAGATGCAGACGGAGCGCTGGTGCTGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTT 118 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 ||| || || |||||||||||| || | | || | || | |||||| || Sbjct 119 GCTGGTGTCGCCCTCCAGGTACTGCCACTTGACCAGGCGGGGCAGGGCGTTCATGTCTGA 178 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | | | | |||| | |||| | |||||| || ||||||||||| || | ||||| Sbjct 179 GAGCTGGAACTTGTCATTTTGGGGCATGGCACCTGGCACGCCGGGCATGCGGTTGAGGGT 238 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 |||||| | ||| || || |||||||| |||||||| | ||| || | ||||| Sbjct 239 GGCCCAAACGTGCTCATCAGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACT 291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576669478079640