Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq53598 255 7e-63
seq2837 134 2e-26
>seq53598
Length=28275
Score = 255 bits (282), Expect = 7e-63
Identities = 654/990 (66%), Gaps = 7/990 (1%)
Strand=Plus/Plus
Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104
||||||||| || || |||| ||||| || || || |||||| || ||| || |
Sbjct 18240 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 18299
Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164
|||| || || | ||||| ||| |||| ||||||| || |||||| ||| || |
Sbjct 18300 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCTACCCCAAAAA 18356
Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224
| ||||| || || | || || || |||| || ||||| | || ||||| | || ||
Sbjct 18357 CACAGACAGAGCGAACATGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACATGT 18416
Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284
||||||| ||||||||||||||||||||||||| | || | |||||| || |||||
Sbjct 18417 CACCTTCAAAGTACTGCCACTTCACAAACCTGGCCAGTGCGTTCATGTCAGAAACGTCGT 18476
Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344
| |||| | | ||| |||| || || | || || | ||| | || |||||||
Sbjct 18477 ACTTGTTACTAGAAGAAACTCCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCACA 18536
Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCG-ATTAACCTG 160403
||| || || |||||||| ||||| || | ||| || ||||||| || | ||| |||
Sbjct 18537 GGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACT-TCAGTATTTTGCTG 18595
Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463
| | || || | |||| | || ||||| || || || || || ||
Sbjct 18596 CTTTCTAATATGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAC 18655
Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523
|| || | | ||| || | |||||| || ||||| | || |
Sbjct 18656 ATTGGAGTACTAAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTATTTTACCATCA 18715
Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583
| | | | || |||| |||||||| ||| || | ||||| ||| || ||
Sbjct 18716 ATAATCTCATGGTGCTTTTTCCACCTTACCTCTTTATAAACAGGCATTTTTTCTGTTTCC 18775
Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643
| ||||| |||| | || | ||| || | || || || || |||| ||||| |
Sbjct 18776 AAGCTGTTTTCACCTTTAAGGGCTTTGAGTTTCTCTACTATTTCCTGGTTGGTCTTTATA 18835
Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703
|||||||| | || || | |||||| | ||| ||||| || | || || ||
Sbjct 18836 GGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGA 18895
Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763
|| ||||||| ||||| ||||||||||| | |||||| ||||| ||||| || |||||
Sbjct 18896 TCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATACACAACACTCTCT 18955
Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823
| | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| ||
Sbjct 18956 AACTGGCTGGAAATAAAGACATTATCAAAACATGAAACTATTCCCTTCACAG-CAGCAAA 19014
Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882
|| | || | | |||| ||| || || | ||| || | |||||||| || |||||
Sbjct 19015 AAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 19074
Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942
| || || | || || | |||||| || || |||| | ||| || ||||| || ||
Sbjct 19075 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACAATTGAGTAAGCAAT 19134
Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002
||||| || | || ||| || || | | | | ||| || | ||||| | ||
Sbjct 19135 TGGAAATTCTGCTTCTTCGTTGCTGAGAGGTTCCATAATGTATTTCCTAGTCTTAGTGAA 19194
Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032
|| |||| || |||||||| |||||
Sbjct 19195 GTAGGCACAGTCTGCTGTCATGTTAATATA 19224
>seq2837
Length=1096
Score = 134 bits (148), Expect = 2e-26
Identities = 206/293 (70%), Gaps = 3/293 (1%)
Strand=Plus/Plus
Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156
|||||| || || || || || |||||| | ||| || | |||| ||||||| ||
Sbjct 2 GTCGAACTTGTTGGCTAAGAGGTGGTGA---TGCTGGAGCAGCCAGGGCACGTCGCCCAC 58
Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216
|||| | | ||||||||| || |||| |||| |||| |||||||| | || || ||
Sbjct 59 CCCGTAGATGCAGACGGAGCGCTGGTGCTGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTT 118
Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276
||| || || |||||||||||| || | | || | || | |||||| ||
Sbjct 119 GCTGGTGTCGCCCTCCAGGTACTGCCACTTGACCAGGCGGGGCAGGGCGTTCATGTCTGA 178
Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336
| | | | |||| | |||| | |||||| || ||||||||||| || | |||||
Sbjct 179 GAGCTGGAACTTGTCATTTTGGGGCATGGCACCTGGCACGCCGGGCATGCGGTTGAGGGT 238
Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389
|||||| | ||| || || |||||||| |||||||| | ||| || | |||||
Sbjct 239 GGCCCAAACGTGCTCATCAGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACT 291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576669478079640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |