Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq62365 360 3e-94 seq5077 215 7e-51 seq66148 167 3e-36 seq29587 118 1e-21 seq38623 98.7 1e-15 >seq62365 Length=2392 Score = 360 bits (398), Expect = 3e-94 Identities = 1032/1576 (65%), Gaps = 21/1576 (1%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| || || || || ||||| || || ||||| | || ||| Sbjct 2320 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 2261 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | || ||||| || ||||| || || || || || ||||| || Sbjct 2260 GTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACACCCAGCTATGTGGCCTTCACC 2201 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| |||| || || || || || ||| ||||||||||||| ||| Sbjct 2200 GATACAGAGCGCCTCATTGGTGACGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 2141 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || |||||||| || || ||||||| | || | || || | Sbjct 2140 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGGCT 2081 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | || || || || || ||||| | | | | Sbjct 2080 GACATGAAGCACTGGCCCTTCCGTGTGGTGAA---TGAGGGTGGCAAGCCCAAGGTGCAA 2024 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657 || || | | ||||||| ||| | || |||| || || || || ||||| | Sbjct 2023 GTGGAGTACAAGGGTGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCCT 1965 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | ||||||||||||| ||| || | | |||| | ||| | |||| || | Sbjct 1964 TACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAAGTGCAGAATGCTGTCAT 1905 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || ||||| ||||||| ||| || || || ||||| || || || |||| | || Sbjct 1904 CACAGTGCCTGCCTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCAT 1845 Query 195778 TGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATG 195836 | || || || ||| | | |||||||| || || || || ||||| || || |||| Sbjct 1844 CACTGGCCTTAA-TGTGATGCGTATTATCAACGAGCCCACGGCAGCTGCTATAGCCTATG 1786 Query 195837 GTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 | |||||||||| | || | ||| |||||||| | |||||||| | || | Sbjct 1785 GCTTGGACAAGAAAGGTACCCGGGCTGGAGAGAAAAATGTGCTCATCTTTGACTTGGGAG 1726 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 | ||||| |||||||| || | || | ||||| | ||| || || || || ||| | | Sbjct 1725 GGGGTACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCCA 1666 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGT 196010 | |||||||| || ||||| ||||| || || || || || | | ||||| Sbjct 1665 CAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTTG 1606 Query 196011 CTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTC 196070 || || ||| || ||| | ||| || ||| |||| || | || | | | Sbjct 1605 TGGAAGAATTCAAGCGTAAGCACAAGCGCGACATTGCTGGCAACAAGCGAGCAGTGAGGC 1546 Query 196071 GGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGG 196130 | || | || || ||||| | || || || |||||| ||| | | ||| | | Sbjct 1545 GACTGCGTACGGCTTGTGAGAGGGCGAAGCGCACTCTCAGCTCTTCCACACAAGCTAGCA 1486 Query 196131 TTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTT 196190 ||||||| ||||| | | || || ||||||||||| || | ||||| ||||| || | Sbjct 1485 TTGAGATCGATTCCCTCTACGAGGGCATTGACTTCTACACCTCCATTACTCGTGCCCGCT 1426 Query 196191 TTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTC 196250 | || ||| | || ||||| | || | | |||| || || || | | || | Sbjct 1425 TCGAGGAGCTCAATGCTGATCTCTTCCGTGGCACTCTGGAGCCGGTGGAGAAGGCTCTGC 1366 Query 196251 GTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCC 196310 |||| || ||| | |||||| || | | || ||||| || ||||| || || |||| Sbjct 1365 GTGATGCCAAGCTAGATAAGGGCCAGATCCAGGAGATTGTGCTGGTGGGTGGCTCTACCC 1306 Query 196311 GTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAA 196370 |||| || ||||| ||| || |||| |||||||||| ||||| | ||||| | Sbjct 1305 GTATCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAAGAGCTCAACAAGA 1246 Query 196371 CGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAG 196430 |||||||| ||||| || |||||||||||||| || || || || ||||| |||| Sbjct 1245 GCATCAACCCCGATGAGGCCGTTGCTTATGGTGCTGCTGTGCAAGCAGCTAT--CCTCAT 1188 Query 196431 GTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCC 196487 | | ||||| | | || || || ||||| ||||| | ||||| | || | |||| Sbjct 1187 G-GGAGACAAGTCTGAGAATGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCTGTCCC 1129 Query 196488 TGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTC 196547 |||| | || ||||| ||||| || ||||| | || | | ||||| || |||| Sbjct 1128 TGGGCATCGAGACAGCTGGTGGAGTGATGACCGCTCTCATCAAGCGCAACACCACCATTC 1069 Query 196548 CGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTCATATT 196606 | || || | || ||| | || || || || || || | || | || | | Sbjct 1068 CCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GCGTCCTGGTG 1010 Query 196607 CAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGAT 196666 || || || || || || | || | ||||| ||| | | || || | || || Sbjct 1009 CAGGTGTACGAGGGCGAGAGGGCCATGACGAAGGACAACAACTTGCTGGGCAAGTTTGAC 950 Query 196667 TTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATA 196726 | ||||| || || | |||||| | || || || ||||| | || || || || Sbjct 949 CTAACGGGCATCCCCCCAGCACCCCGTGGAGTCCCCCAGATCGAGGTCACTTTTGACATC 890 Query 196727 GACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAG 196786 || || ||||| || || || |||| |||| ||||||| | || || | ||| Sbjct 889 GATGCCAATGGTATCCTGAATGTCAGTGCTGTGGACAAGAGCACGGGTAAGGAGAACAAG 830 Query 196787 ATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAA 196846 || || ||||| |||||||| || ||| ||||| || ||||| |||||||| ||| Sbjct 829 ATCACCATCACCAACGACAAGGGTCGCCTTAGCAAGGATGACATTGACCGTATGGTGCAA 770 Query 196847 GATGCGGAAAAGTACA 196862 || || || || |||| Sbjct 769 GAAGCAGAGAAATACA 754 >seq5077 Length=15507 Score = 215 bits (238), Expect = 7e-51 Identities = 371/539 (69%), Gaps = 0/539 (0%) Strand=Plus/Plus Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 ||||| | |||||||| || || ||||| || |||||||| ||| |||| | ||||||| Sbjct 1443 AATGTTCTTATCTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACTATTGAA 1502 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 | ||| || || || || || | ||||| ||||| ||||| | ||||| ||||| || Sbjct 1503 GATGGCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGACTTT 1562 Query 195986 GATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATT 196045 || || | || || || || || ||| || ||| |||||||||| || Sbjct 1563 GACAACCGCATGGTCAACCACTTCATTGCCGAATTCAAGCGCAAGCATAAGAAAGACATC 1622 Query 196046 TCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACT 196105 | || || || ||||||| || | |||||||| || ||||| || || ||| Sbjct 1623 AGCGAGAACAAGAGAGCAGTTCGTCGCCTCCGCACTGCATGCGAGCGTGCAAAGCGTACT 1682 Query 196106 CTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTC 196165 || || |||| | || | | |||| |||||||| | | ||| || ||||||||| Sbjct 1683 CTGTCGTCTAGCACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTATTGACTTC 1742 Query 196166 TATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGT 196225 || ||| | |||||| | || || ||||||||| | ||| |||| |||| | Sbjct 1743 TACACATCCATTACCAGAGCTCGCTTTGAAGAGCTGAACGCTGACCTGTTCCGTGGCACC 1802 Query 196226 ATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAA 196285 |||| ||||| ||| | | || || || ||||| | || || || || | |||| Sbjct 1803 CTGGATCCTGTGGAAAAGGCCCTCCGGGATGCAAAACTCGACAAATCGCAGATCCATGAC 1862 Query 196286 ATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTC 196345 ||||| || || || || || || ||||| || |||||||| || ||||| ||| Sbjct 1863 ATTGTGCTGGTTGGTGGGTCTACTCGTATCCCAAAGATTCAGAAGCTGCTTCAGGATTTC 1922 Query 196346 TTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404 ||||| ||||| | ||||| | ||||| || |||||||| || ||||||||||| Sbjct 1923 TTCAACGGCAAAGAGCTGAACAAGAGCATCAATCCTGATGAAGCTGTAGCTTATGGTGC 1981 Score = 125 bits (138), Expect = 9e-24 Identities = 115/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || ||||||||||| || || |||| ||| || || || ||||| ||||| || | Sbjct 1183 ATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACAAAAGATG 1242 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826 ||| ||||||| || || || ||| || ||||||||||||| |||||||| |||||| Sbjct 1243 CTGGAACTATTGCAGGGCTCAA-TGTGCTGCGAATTATCAATGAGCCAACAGCTGCTGCA 1301 Query 195827 ATTGCTTATGGTCTGGACAAGAA 195849 || |||||||| |||||||| || Sbjct 1302 ATCGCTTATGGGCTGGACAAAAA 1324 Score = 104 bits (114), Expect = 3e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 196610 GTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTT 196668 ||||||||||||||||| | | || | ||||| ||| | | || || | || || | Sbjct 2833 GTATATGAAGGAGAACG-TGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTGAGCT 2891 Query 196669 GACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGA 196728 |||||| ||||| |||| ||||||||||| || |||||| | || ||| ||||| || Sbjct 2892 GACGGGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGA 2951 Query 196729 CGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGAT 196788 || ||||| || || || || | |||| ||| ||| | ||||||| | ||||| Sbjct 2952 TGCCAATGGCATCCTGAATGTGTCTGCTGTGGATAAGAGTACTGGCAAGGAGAACAAGAT 3011 Query 196789 TGTGATTACCAATGACAAGGG 196809 ||| || ||||||||||| Sbjct 3012 CACGATAACAAATGACAAGGG 3032 >seq66148 Length=2144 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || || || || |||||||| || |||||| | Sbjct 476 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 535 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| || || |||||||||||||| || |||||| Sbjct 536 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 595 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || || || || ||||| |||||||| || ||||| | || |||||| Sbjct 596 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 655 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || || ||||| || | || ||||||| Sbjct 656 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 702 Score = 163 bits (180), Expect = 4e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || || || || |||||||| || |||||| | Sbjct 704 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 763 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| || || |||||||||||||| || |||||| Sbjct 764 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 823 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || || || || ||||| |||||||| || ||||| | || |||||| Sbjct 824 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 883 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || ||||| || || || || ||||| || | || |||||||| Sbjct 884 ATCCAGAAGGAATCCACCCTTCATCTTGTGCTGCGCCTGAGGGGTGGT 931 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || || || || |||||| | ||||||||| | Sbjct 248 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAGGTTGAGCCCAGT 307 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| || || |||||||||||||| || |||||| Sbjct 308 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 367 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || || || || ||||| |||||||| || ||||| | || |||||| Sbjct 368 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 427 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||| || || || || ||||| || | || ||||||| Sbjct 428 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 474 >seq29587 Length=6781 Score = 118 bits (130), Expect = 1e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 196637 AAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGT 196696 ||||| || ||||| || |||||||||||| | || || || || |||| || | ||| Sbjct 2796 AAGGACAATCATCTTCTGGGAACTTTCGATCTCACTGGAATCCCTCCTGCCCCTCGTGGT 2855 Query 196697 GTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCT 196756 || || |||||| | ||| |||||| ||||| | || ||||| || ||||||||| Sbjct 2856 GTCCCCCAGATTGAAGTTACCTTCGAAATAGATGTGAACGGAATCCTCCGTGTCACAGCT 2915 Query 196757 GAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTT 196816 || ||||||| |||| || | ||||| |||||| ||||| || ||||| Sbjct 2916 GAAGACAAGGGCACTGGGAACAAAAACAAGATCACGATTACAAATGATCAGAACCGGCTG 2975 Query 196817 TCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876 | ||||| ||||| | |||||| | ||||| || |||| |||||||||| || Sbjct 2976 ACACCAGAGGAGATTGAGAGGATGGTTAATGATGCTGAGAAGTTTGCGGAAGAAGACAAG 3035 >seq38623 Length=13507 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || |||||||| ||||| |||||||||||||| ||||| ||||||||||| Sbjct 13212 AGGCATTCCTCCTGATCAGCAGCGACTGATTTTTGCTGGTAAGCAGCTAGAAGATGGACG 13153 Query 172023 TACCCTCGCTGATTACAACGTTCAAAA 172049 || || |||| ||||| ||||||| Sbjct 13152 CACGCTGTCTGACTACAATATTCAAAA 13126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657235876520080