Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq5077 123 2e-22
seq45871 102 6e-16
>seq5077
Length=15507
Score = 123 bits (136), Expect = 2e-22
Identities = 364/554 (66%), Gaps = 18/554 (3%)
Strand=Plus/Minus
Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836
|||||||| || ||||||||||||||||| | | | || || | ||| || |||||
Sbjct 1981 GCACCATAAGCTACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCGTTGAAG 1922
Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895
|||| ||| || | ||| | ||| || ||||||| || || ||||| | |||||
Sbjct 1921 AAATCCTGAAGCAGCT-TCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCACAAT 1863
Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955
||||| | ||| ||||| || ||||||| |||| | | ||||| || || || ||
Sbjct 1862 GTCATGGATCTGCGATTTGTCGAGTTTTGCATCCCGGAGGGCCTTTTCCACAGGATCCAG 1803
Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGAC 282012
| | |||| ||| | || ||||| || |||||| |||| || |||
Sbjct 1802 GGTGCCACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTG-- 1745
Query 282013 ATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 282071
|| || ||||| || || | | |||||||| |||||| | | || || ||| |
Sbjct 1744 --TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGACG 1687
Query 282072 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCT 282127
| || | ||| || ||||| || ||||| || | || | || | | ||| | ||
Sbjct 1686 ACAGAGTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCT 1627
Query 282128 GATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 282187
|||| ||| | |||| || | |||||| || ||| | | || |
Sbjct 1626 CGCTGAT----GTCTTTCTTATGCTTGCGCTTGAATTCGGCAATGAAGTGGTTGACCATG 1571
Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247
|| || ||||| ||||| || ||||| | ||| | |||| || | | | || | ||
Sbjct 1570 CGGTTGTCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAG 1511
Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307
| |||||||||| || || || | |||||| ||| ||||| || | ||||| |||
Sbjct 1510 ATGCCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATA 1451
Query 282308 AGTACATTCATTTC 282321
|| |||||| ||||
Sbjct 1450 AGAACATTCCTTTC 1437
Score = 91.5 bits (100), Expect = 1e-12
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749
|||||| |||||||||||||| | ||| |||| | || || ||||| || ||||
Sbjct 484 CAAAAACCGTATTGGTTGGATTCATTGCGACTTGGTTCTTCGCAGCATCGCCGATCAACC 425
Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809
||||| ||||| || | || || ||| || || || ||||| || || || ||||
Sbjct 424 TCTCTGTGTCTGTGAAGGCGACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCGTTGGCAA 365
Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869
| ||||| || || |||| ||| ||||||| ||||| | | || || || | ||| |
Sbjct 364 TGATTTCCACCTTCCCATGTTGGAATACACCAACACAGGAATAGGTGGTGCCAAGATCGA 305
Query 282870 TACCAATAGC 282879
| || | |||
Sbjct 304 TTCCGACAGC 295
>seq45871
Length=43304
Score = 102 bits (112), Expect = 6e-16
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235
||| || || ||| | |||||||| ||||| || |||||| | ||| | | | |||||
Sbjct 17891 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 17832
Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295
|||||| || || || ||| | || ||| ||||||||||||||||| ||||| |||||
Sbjct 17831 TCATTATGGTGCCCCTAAGGAAATGGAATCGTATTATCAAGAAATTGGGAGAGCTGGTCG 17772
Query 131296 TGATGG 131301
||||||
Sbjct 17771 TGATGG 17766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3736889842074714
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |