Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq5077 123 2e-22 seq45871 102 6e-16 >seq5077 Length=15507 Score = 123 bits (136), Expect = 2e-22 Identities = 364/554 (66%), Gaps = 18/554 (3%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||||||||||||||| | | | || || | ||| || ||||| Sbjct 1981 GCACCATAAGCTACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCGTTGAAG 1922 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| ||| || | ||| | ||| || ||||||| || || ||||| | ||||| Sbjct 1921 AAATCCTGAAGCAGCT-TCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCACAAT 1863 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||| ||||| || ||||||| |||| | | ||||| || || || || Sbjct 1862 GTCATGGATCTGCGATTTGTCGAGTTTTGCATCCCGGAGGGCCTTTTCCACAGGATCCAG 1803 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGAC 282012 | | |||| ||| | || ||||| || |||||| |||| || ||| Sbjct 1802 GGTGCCACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTG-- 1745 Query 282013 ATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 282071 || || ||||| || || | | |||||||| |||||| | | || || ||| | Sbjct 1744 --TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGACG 1687 Query 282072 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCT 282127 | || | ||| || ||||| || ||||| || | || | || | | ||| | || Sbjct 1686 ACAGAGTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCT 1627 Query 282128 GATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 282187 |||| ||| | |||| || | |||||| || ||| | | || | Sbjct 1626 CGCTGAT----GTCTTTCTTATGCTTGCGCTTGAATTCGGCAATGAAGTGGTTGACCATG 1571 Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || ||||| ||||| || ||||| | ||| | |||| || | | | || | || Sbjct 1570 CGGTTGTCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAG 1511 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | |||||||||| || || || | |||||| ||| ||||| || | ||||| ||| Sbjct 1510 ATGCCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATA 1451 Query 282308 AGTACATTCATTTC 282321 || |||||| |||| Sbjct 1450 AGAACATTCCTTTC 1437 Score = 91.5 bits (100), Expect = 1e-12 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| |||||||||||||| | ||| |||| | || || ||||| || |||| Sbjct 484 CAAAAACCGTATTGGTTGGATTCATTGCGACTTGGTTCTTCGCAGCATCGCCGATCAACC 425 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| || | || || ||| || || || ||||| || || || |||| Sbjct 424 TCTCTGTGTCTGTGAAGGCGACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCGTTGGCAA 365 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| || || |||| ||| ||||||| ||||| | | || || || | ||| | Sbjct 364 TGATTTCCACCTTCCCATGTTGGAATACACCAACACAGGAATAGGTGGTGCCAAGATCGA 305 Query 282870 TACCAATAGC 282879 | || | ||| Sbjct 304 TTCCGACAGC 295 >seq45871 Length=43304 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 17891 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 17832 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 17831 TCATTATGGTGCCCCTAAGGAAATGGAATCGTATTATCAAGAAATTGGGAGAGCTGGTCG 17772 Query 131296 TGATGG 131301 |||||| Sbjct 17771 TGATGG 17766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3736889842074714