Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq66148 156 8e-33 seq28340 123 5e-23 >seq66148 Length=2144 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||||| || | || || || ||||| ||||| || || || || || Sbjct 474 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 415 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || || ||||| || || || ||||| ||||| Sbjct 414 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGA 355 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||||||||| || ||| | || || || Sbjct 354 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACC 295 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 ||||| || || ||||||||||||| ||||| ||||| ||||||||| || Sbjct 294 TCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATTTTT 244 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||||| || | || || || || || ||||| || || || || || Sbjct 702 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 643 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || || ||||| || || || ||||| ||||| Sbjct 642 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGA 583 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||||||||| || ||| | || || ||| Sbjct 582 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACT 523 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| ||||| ||||| |||||||| Sbjct 522 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 476 >seq28340 Length=39979 Score = 123 bits (136), Expect = 5e-23 Identities = 125/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| ||| | |||||||| || ||||| || ||||| || || ||||| Sbjct 12851 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 12792 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || ||||| || ||||||| | || || ||||| ||||| || |||||| Sbjct 12791 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTT 12732 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || || | ||| | || ||||| ||| |||| || || |||| Sbjct 12731 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 12689 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | | || || || || || |||| ||||| || |||||||| || || Sbjct 9866 CAGTTCCATGTGACCATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 9807 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| || | || || || || |||||||||||| Sbjct 9806 AAATGGATGCACTGGAGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGGTAAC 9747 Query 60563 TTCTATTTTAGAACATACAAG 60583 ||||||| | | ||||| ||| Sbjct 9746 TTCTATTATCGGACATATAAG 9726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980868768208071