Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq28340 132 9e-26
>seq28340
Length=39979
Score = 132 bits (146), Expect = 9e-26
Identities = 126/161 (78%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438
|| ||||||||||| ||| | |||||||| || ||||| || |||||||| || |||||
Sbjct 12851 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 12792
Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498
|| ||||| || ||||| || |||| || || || || ||||| ||||| || ||||||
Sbjct 12791 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTT 12732
Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539
|| || | ||| | |||||||| ||| ||||||| || ||
Sbjct 12731 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 12691
Score = 89.7 bits (98), Expect = 9e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600
|| || || || |||||| ||||| | ||||| ||||| |||||||| | ||||||||
Sbjct 10504 GCTTTCTTTGGAGCTCAGATGAATGCATTTATTCATGTCATTATGTACATGTATTATGGA 10445
Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660
| || || ||||| | || ||| | || || | |||||||| || ||| | || |||
Sbjct 10444 TTAGCTGCCTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATACTTGACCATA 10385
Query 58661 ATGCAATTGGTA 58672
|||||||||||
Sbjct 10384 TTGCAATTGGTA 10373
Score = 86.0 bits (94), Expect = 1e-11
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728
||| || |||||| | | || || || || || |||| ||||| || ||||| || ||
Sbjct 9870 GGTGCAGTTCCATGTGACCATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 9811
Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788
|| ||||||| ||| ||| || || ||||| || | || || || || |||||||
Sbjct 9810 CCCTAAATGGATGCACTGGAGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGG 9751
Query 58789 TAACTTCTATTTTAGAACATACAAG 58813
||||||||||| | | ||||| |||
Sbjct 9750 TAACTTCTATTATCGGACATATAAG 9726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 902550825051040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |