Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq56774 105 9e-18 seq3012 86.0 8e-12 >seq56774 Length=13840 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 106 TTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 165 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 166 CCCCGACGGGGAG 178 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 107 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 166 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 167 CCCGACGGGGAGG 179 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 178 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 119 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 118 TACTAACGAGGA 107 >seq3012 Length=10011 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||| ||||| ||| | || | ||||| | ||||||||||||||||||||| Sbjct 111 TCCTCGTTAGTATGGTGGTGAGTTTCCCTGCCTGTCCC-CGGGAGACCGGGGTTCGATTC 53 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 52 CCCGACGGGGAG 41 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/72 (88%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||| ||||| ||| | || | ||||| | ||||||||||||||||||||| Sbjct 111 TCCTCGTTAGTATGGTGGTGAGTTTCCCTGCCTGTCCC-CGGGAGACCGGGGTTCGATTC 53 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 52 CCCGACGGGGAG 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652223055094160