Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq66148 140 3e-28
seq35785 104 2e-17
>seq66148
Length=2144
Score = 140 bits (154), Expect = 3e-28
Identities = 154/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | ||||||||| ||||| || ||||| ||| || ||| | || || |||||
Sbjct 679 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 620
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||| ||| | || |||| |||||| || ||||| |||||||||||||| ||||||
Sbjct 619 CTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTT 560
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||||| | |||| ||||| ||||||| || || | ||||| ||| ||||| ||
Sbjct 559 GGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCCGT 500
Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661
||| || || || || |||||||||
Sbjct 499 CAGGGTCTTCACAAAGATCTGCATG 475
Score = 140 bits (154), Expect = 3e-28
Identities = 154/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | |||||| || ||||| || ||||| ||| || ||| | || || |||||
Sbjct 907 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 848
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||| ||| | || |||| |||||| || ||||| |||||||||||||| ||||||
Sbjct 847 CTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTT 788
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||
Sbjct 787 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCCGT 728
Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661
||| || || || || |||||||||
Sbjct 727 CAGGGTCTTCACAAAGATCTGCATG 703
Score = 134 bits (148), Expect = 1e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | |||||| || ||||| || ||||| ||| || ||| | || || |||||
Sbjct 451 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 392
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||| ||| | || |||| |||||| || ||||| |||||||||||||| ||||||
Sbjct 391 CTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTT 332
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||||| | |||| ||||| ||||||| || || | ||||| ||| ||||| ||
Sbjct 331 GGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCTGT 272
Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660
||| || || || || ||||||||
Sbjct 271 CAGGGTCTTCACAAAGATCTGCAT 248
>seq35785
Length=10255
Score = 104 bits (114), Expect = 2e-17
Identities = 89/110 (81%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925
||||| || || || | |||||||||||||||||||| |||| ||||| ||||||
Sbjct 9798 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 9739
Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975
||||| | |||||| | ||| |||||||||||||||||| |||||| ||
Sbjct 9738 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCAGTCTC 9689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482960408158360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |