Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq53598 161 1e-34
seq1912 125 8e-24
>seq53598
Length=28275
Score = 161 bits (178), Expect = 1e-34
Identities = 548/846 (65%), Gaps = 22/846 (3%)
Strand=Plus/Plus
Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219
||||| || || || || || || || || || || || || || || || |||||
Sbjct 18329 ATCCAGTTCAGGTCTCCTACCCCAAAAACACAGACAGAGCGAACATGAACTCCACTGCAT 18388
Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279
|| || || | || || | | || || || || |||| |||||||| || |||||
Sbjct 18389 GGTGGGTAGGGTGCACCTTTGGACATGTCACCTTCAAAGTACTGCCACTTCACAAACCTG 18448
Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338
| | || | |||||| || ||||||||||| ||| || | || | || || ||
Sbjct 18449 GCCAGTGCGTTCATGTCAGAAACGTCGTACTTGTT-ACTAGAAGAAACTCCACCTGGGAC 18507
Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398
| || | |||||| | || |||||||||| || ||||| || || || || || |
Sbjct 18508 TTCAGGGATTCTCTGAATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTGTCTTTTGC 18567
Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCT 162455
|||||| ||||||| | | |||| | | || ||||| || | ||
Sbjct 18568 CCACTCAATGAACTTCAGTA---TTTTGCTGCTTTCTAATATGTATTCTACAAATCTTCT 18624
Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515
| | || | ||| || || ||||||||||||| || | | | ||| || | | |||
Sbjct 18625 GCTAACTACAAAATAGGCACTACCAGAAAACATTGGAGTACTAAGAGGTGGTAGTTGTTT 18684
Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGC 162575
|||| || ||||| || | || || | | | | || ||| ||||||| |
Sbjct 18685 GTCTATGCCTGTGTTCTTTATTTTACCATCAATAATCTCATGGTGCTTTTTCCACCTTAC 18744
Query 162576 CATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCT 162631
| ||| || || || | ||| || || | ||||| ||| | ||| |
Sbjct 18745 CTCTTTA----TAAACAGGCATTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTT 18800
Query 162632 TCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAA 162691
| || | || || || | |||||||| | |||||||| |||| ||||| || |
Sbjct 18801 TGAGTTTCTCTACTATTTCCTGGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTA 18860
Query 162692 TAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCT 162751
| | |||||||| || || || ||| ||||| | | ||||| | || ||||
Sbjct 18861 TTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCT 18920
Query 162752 GGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGT 162811
| || | ||||| || || ||||| || ||||| ||| ||| | ||||||||| |
Sbjct 18921 GCACCCTGCTCCATGAAGCATACACAACACTCTCTAACTGGCTGGAAATAAAGACATTAT 18980
Query 162812 CGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTAT 162868
| ||||| |||||||| ||| |||| || || | || | || || ||| | |
Sbjct 18981 CAAAACATGAAACTATTCCCTTCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGT 19037
Query 162869 CTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACA 162928
| || || | |||||| | |||||||||||| ||||| | || || | ||| || | ||
Sbjct 19038 CAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCA 19097
Query 162929 TCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGAC 162988
|||| || || || | ||||| || || || || || || || || || || ||| |
Sbjct 19098 TCTCAATTTTGTGATAAACCACAATTGAGTAAGCAATTGGAAATTCTGCTTCTTCGTTGC 19157
Query 162989 TGAGAG 162994
||||||
Sbjct 19158 TGAGAG 19163
>seq1912
Length=81603
Score = 125 bits (138), Expect = 8e-24
Identities = 395/603 (66%), Gaps = 13/603 (2%)
Strand=Plus/Plus
Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005
||||| ||| | ||||| | || | |||||| ||||||| |||| | || | ||||
Sbjct 79301 GCCAGCTCTCTGGGGGAGAGAAAATCTTCCACGTGGATGAAAGAGTCTGCTGGAATGTAA 79360
Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065
|| || || || ||||| || | || ||||| | ||||| | || |||| |||||
Sbjct 79361 TTCTCATAGTTTTCTCTGGAAGGGCCCAGTACAACTGGTACTGATCCGGCCAGAAGAGCA 79420
Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125
||| ||||| || ||||| || || |||| | || || ||||| | || ||||||
Sbjct 79421 TTGTAAAGTTTCTCAGTAATGTAATCTTTGTGGATTGAATTTTCAAAGGAAAGGTAGAAT 79480
Query 177126 TTACA--GGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183
||||| | ||||||| || || |||| | ||| | ||| ||||| | | |
Sbjct 79481 TTACAAGTGGAGATAGT--TGGAATCAAGTTTTTATCATTGACATAGTCTCCGAAGGCTT 79538
Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242
|| || ||| || || |||| ||| || ||||| ||| || || || || |
Sbjct 79539 GTCCATAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGTG 79597
Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGA 177302
|| || |||||| || || || ||||| || || || || ||| || ||
Sbjct 79598 TGCTCAGGGTTCCAGTTACTTACAACCCAACAGACCAAGTTTTCCTTACTTGGCAC---- 79653
Query 177303 TTCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361
||| | ||| | | | | | || | | | | || || ||||| |||||||| ||
Sbjct 79654 TTCAAATGTAAAGGAACTTGTACCGACCATCATGAAGCCGTAAGGCACCTGAATATCTGA 79713
Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGGGC 177420
|| || | || || | || || || || |||| ||| || || | ||| || |
Sbjct 79714 ATCACGCCGATAAGTCAGGGTCAGGTTAAAGAGGTGTTCAATGCCACTCTTTTGTGGTG- 79772
Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480
| | | | || || |||||||||||||| |||||||| || || | ||| |||| || |
Sbjct 79773 TATGAGTTGGAGACTCTAAGTTCATCCAAATCCACTTCTGGAATGGTGGCCTGGCTTGCT 79832
Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTT 177540
||||| | || |||| || || || ||||| |||| || || |||| || |
Sbjct 79833 GAGGTAAATTAGTCAGATCCCAGCTAATGTCCCTGTGATGAATGAGAACAGCATGGGATC 79892
Query 177541 TGT 177543
|||
Sbjct 79893 TGT 79895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577881123054400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |