Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq53598 161 1e-34 seq1912 125 8e-24 >seq53598 Length=28275 Score = 161 bits (178), Expect = 1e-34 Identities = 548/846 (65%), Gaps = 22/846 (3%) Strand=Plus/Plus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || || || || || || || || || || || || || ||||| Sbjct 18329 ATCCAGTTCAGGTCTCCTACCCCAAAAACACAGACAGAGCGAACATGAACTCCACTGCAT 18388 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | || || || || |||| |||||||| || ||||| Sbjct 18389 GGTGGGTAGGGTGCACCTTTGGACATGTCACCTTCAAAGTACTGCCACTTCACAAACCTG 18448 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || ||||||||||| ||| || | || | || || || Sbjct 18449 GCCAGTGCGTTCATGTCAGAAACGTCGTACTTGTT-ACTAGAAGAAACTCCACCTGGGAC 18507 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | || | |||||| | || |||||||||| || ||||| || || || || || | Sbjct 18508 TTCAGGGATTCTCTGAATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTGTCTTTTGC 18567 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCT 162455 |||||| ||||||| | | |||| | | || ||||| || | || Sbjct 18568 CCACTCAATGAACTTCAGTA---TTTTGCTGCTTTCTAATATGTATTCTACAAATCTTCT 18624 Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515 | | || | ||| || || ||||||||||||| || | | | ||| || | | ||| Sbjct 18625 GCTAACTACAAAATAGGCACTACCAGAAAACATTGGAGTACTAAGAGGTGGTAGTTGTTT 18684 Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGC 162575 |||| || ||||| || | || || | | | | || ||| ||||||| | Sbjct 18685 GTCTATGCCTGTGTTCTTTATTTTACCATCAATAATCTCATGGTGCTTTTTCCACCTTAC 18744 Query 162576 CATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCT 162631 | ||| || || || | ||| || || | ||||| ||| | ||| | Sbjct 18745 CTCTTTA----TAAACAGGCATTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTT 18800 Query 162632 TCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAA 162691 | || | || || || | |||||||| | |||||||| |||| ||||| || | Sbjct 18801 TGAGTTTCTCTACTATTTCCTGGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTA 18860 Query 162692 TAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCT 162751 | | |||||||| || || || ||| ||||| | | ||||| | || |||| Sbjct 18861 TTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCT 18920 Query 162752 GGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGT 162811 | || | ||||| || || ||||| || ||||| ||| ||| | ||||||||| | Sbjct 18921 GCACCCTGCTCCATGAAGCATACACAACACTCTCTAACTGGCTGGAAATAAAGACATTAT 18980 Query 162812 CGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTAT 162868 | ||||| |||||||| ||| |||| || || | || | || || ||| | | Sbjct 18981 CAAAACATGAAACTATTCCCTTCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGT 19037 Query 162869 CTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACA 162928 | || || | |||||| | |||||||||||| ||||| | || || | ||| || | || Sbjct 19038 CAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCA 19097 Query 162929 TCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGAC 162988 |||| || || || | ||||| || || || || || || || || || || ||| | Sbjct 19098 TCTCAATTTTGTGATAAACCACAATTGAGTAAGCAATTGGAAATTCTGCTTCTTCGTTGC 19157 Query 162989 TGAGAG 162994 |||||| Sbjct 19158 TGAGAG 19163 >seq1912 Length=81603 Score = 125 bits (138), Expect = 8e-24 Identities = 395/603 (66%), Gaps = 13/603 (2%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | |||||| ||||||| |||| | || | |||| Sbjct 79301 GCCAGCTCTCTGGGGGAGAGAAAATCTTCCACGTGGATGAAAGAGTCTGCTGGAATGTAA 79360 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || || ||||| || | || ||||| | ||||| | || |||| ||||| Sbjct 79361 TTCTCATAGTTTTCTCTGGAAGGGCCCAGTACAACTGGTACTGATCCGGCCAGAAGAGCA 79420 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| || || |||| | || || ||||| | || |||||| Sbjct 79421 TTGTAAAGTTTCTCAGTAATGTAATCTTTGTGGATTGAATTTTCAAAGGAAAGGTAGAAT 79480 Query 177126 TTACA--GGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 ||||| | ||||||| || || |||| | ||| | ||| ||||| | | | Sbjct 79481 TTACAAGTGGAGATAGT--TGGAATCAAGTTTTTATCATTGACATAGTCTCCGAAGGCTT 79538 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 || || ||| || || |||| ||| || ||||| ||| || || || || | Sbjct 79539 GTCCATAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGTG 79597 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGA 177302 || || |||||| || || || ||||| || || || || ||| || || Sbjct 79598 TGCTCAGGGTTCCAGTTACTTACAACCCAACAGACCAAGTTTTCCTTACTTGGCAC---- 79653 Query 177303 TTCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | ||| | | | | | || | | | | || || ||||| |||||||| || Sbjct 79654 TTCAAATGTAAAGGAACTTGTACCGACCATCATGAAGCCGTAAGGCACCTGAATATCTGA 79713 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGGGC 177420 || || | || || | || || || || |||| ||| || || | ||| || | Sbjct 79714 ATCACGCCGATAAGTCAGGGTCAGGTTAAAGAGGTGTTCAATGCCACTCTTTTGTGGTG- 79772 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 | | | | || || |||||||||||||| |||||||| || || | ||| |||| || | Sbjct 79773 TATGAGTTGGAGACTCTAAGTTCATCCAAATCCACTTCTGGAATGGTGGCCTGGCTTGCT 79832 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTT 177540 ||||| | || |||| || || || ||||| |||| || || |||| || | Sbjct 79833 GAGGTAAATTAGTCAGATCCCAGCTAATGTCCCTGTGATGAATGAGAACAGCATGGGATC 79892 Query 177541 TGT 177543 ||| Sbjct 79893 TGT 79895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577881123054400