Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq35785 104 2e-17
seq66148 91.5 1e-13
>seq35785
Length=10255
Score = 104 bits (114), Expect = 2e-17
Identities = 89/110 (81%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564
|||| ||| ||||| | ||||| ||||||||||| ||| ||||| || |||||||||
Sbjct 9798 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 9739
Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614
|| ||||| ||||| | ||||||| | |||||||||||| ||| |||||
Sbjct 9738 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCAGTCTC 9689
>seq66148
Length=2144
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
|| ||||| || | ||| | | | ||||| || || |||||||||||| || ||| ||
Sbjct 694 CAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 635
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
| |||||| ||||| || |||| |||| || | ||| ||||| ||||| ||||||||
Sbjct 634 CCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTC 575
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
|| || || || || | | ||| | || || | ||||| ||||| | ||
Sbjct 574 CTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACTTCCAGGGT 515
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
| || || || ||||| || || | || |||||||||
Sbjct 514 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 475
Score = 82.4 bits (90), Expect = 7e-11
Identities = 150/220 (68%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
|| ||||| || | ||| | | | || || || || |||||||||||| || ||| ||
Sbjct 922 CAGGCGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 863
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
| |||||| ||||| || |||| |||| || | ||| ||||| ||||| ||||||||
Sbjct 862 CCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTC 803
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
|| || || || || | | || | || || | ||||| ||||| | ||
Sbjct 802 CTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGT 743
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
| || || || ||||| || || | || |||||||||
Sbjct 742 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476157293366040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |