Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq35785 104 2e-17 seq66148 91.5 1e-13 >seq35785 Length=10255 Score = 104 bits (114), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| ||| ||||| | ||||| ||||||||||| ||| ||||| || ||||||||| Sbjct 9798 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 9739 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 || ||||| ||||| | ||||||| | |||||||||||| ||| ||||| Sbjct 9738 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCAGTCTC 9689 >seq66148 Length=2144 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| || | ||| | | | ||||| || || |||||||||||| || ||| || Sbjct 694 CAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 635 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| ||||| || |||| |||| || | ||| ||||| ||||| |||||||| Sbjct 634 CCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTC 575 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || || | | ||| | || || | ||||| ||||| | || Sbjct 574 CTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACTTCCAGGGT 515 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || || ||||| || || | || ||||||||| Sbjct 514 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 475 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| || | ||| | | | || || || || |||||||||||| || ||| || Sbjct 922 CAGGCGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 863 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| ||||| || |||| |||| || | ||| ||||| ||||| |||||||| Sbjct 862 CCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTC 803 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || || | | || | || || | ||||| ||||| | || Sbjct 802 CTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGT 743 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || || ||||| || || | || ||||||||| Sbjct 742 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476157293366040