Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq47714 197 2e-44
seq53582 194 2e-43
seq28048 194 2e-43
seq25714 194 2e-43
seq22761 194 2e-43
seq38302 147 3e-29
>seq47714
Length=5830
Score = 197 bits (218), Expect = 2e-44
Identities = 182/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 493 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 546
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | ||||||| |||
Sbjct 547 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 606
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| | |||| ||||||||||| ||||||||
Sbjct 607 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 666
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| | ||| |||||| ||||||| |||||||||||||||||||||||
Sbjct 667 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 715
>seq53582
Length=3920
Score = 194 bits (214), Expect = 2e-43
Identities = 181/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||||||||| || || |||| || |||| |||||
Sbjct 969 TACAAGGTGCTGAAGCAGGTGCACCCTGACAC-----GGGCATC-TCATCCAAGGCCATG 916
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | ||||||| |||
Sbjct 915 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 856
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| | |||| ||||||||||| ||||||||
Sbjct 855 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 796
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| | ||| |||||| ||||||| |||||||||||||||||||||||
Sbjct 795 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 747
>seq28048
Length=1890
Score = 194 bits (214), Expect = 2e-43
Identities = 181/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 1397 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 1344
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | ||||||| |||
Sbjct 1343 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 1284
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| | |||| ||||||||||| ||||||||
Sbjct 1283 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 1224
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| | ||| ||||| ||||||| |||||||||||||||||||||||
Sbjct 1223 CTCCTGCTGCCTGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 1175
>seq25714
Length=1417
Score = 194 bits (214), Expect = 2e-43
Identities = 181/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 264 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 317
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||| ||||| |||| ||||||| | ||||||| |||
Sbjct 318 GGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 377
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| | |||| ||||||||||| ||||||||
Sbjct 378 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 437
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| | ||| |||||| ||||||| |||||||||||||||||||||||
Sbjct 438 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 486
>seq22761
Length=1104
Score = 194 bits (214), Expect = 2e-43
Identities = 181/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 616 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCATCCAAGGCCATG 669
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | ||||||| |||
Sbjct 670 AGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 729
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| | |||| ||||||||||| ||||||||
Sbjct 730 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 789
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| | ||| |||||| ||||||| ||| |||||||||||||||||||
Sbjct 790 CTCCTGCTGCCCGGCGAGCTGGCCAAGCATGCCGTCTCCGAGGGCACCA 838
>seq38302
Length=22942
Score = 147 bits (162), Expect = 3e-29
Identities = 172/231 (74%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||||||||| |||||||| |||||| |||| |||| ||| |||| |||
Sbjct 13342 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 13395
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || ||||||||||| | || ||||||| || ||| |
Sbjct 13396 TGGGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCTGGAGAAGCCTCCC 13455
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||| | | |||||||||| ||| ||| | | || ||||| ||||| |||||||
Sbjct 13456 GCCTGGCCCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATTCAGACAGCCGTGC 13515
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| || | | | || || ||||||| |||||| ||||| ||||||||||
Sbjct 13516 GCTTGCTGCTCCCGGGAGAGCTGGCCAAGCACGCTGTCTCGGAGGGCACCA 13566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7170462630914618
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |