Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq23705 138 2e-27
seq29696 134 2e-26
seq35785 96.9 5e-15
>seq23705
Length=12823
Score = 138 bits (152), Expect = 2e-27
Identities = 112/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || || || || ||||||||||| || || | ||| |
Sbjct 9182 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 9123
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| |
Sbjct 9122 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 9063
Query 39759 CAACAAGTCTCTCTCC 39774
|||| | |||||| ||
Sbjct 9062 CAACCACTCTCTCACC 9047
Score = 86.0 bits (94), Expect = 9e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853
||||||||| | ||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 6691 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTA 6632
Query 39854 AA 39855
||
Sbjct 6631 AA 6630
Score = 86.0 bits (94), Expect = 9e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853
||||||||| | ||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 6978 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTA 6919
Query 39854 AA 39855
||
Sbjct 6918 AA 6917
>seq29696
Length=9771
Score = 134 bits (148), Expect = 2e-26
Identities = 104/124 (84%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
||||||||||||| || | |||||||||||| |||||||||||||||| || | || |
Sbjct 6809 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 6868
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| |||||||| || | |||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct 6869 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 6928
Query 39759 CAAC 39762
| ||
Sbjct 6929 CTAC 6932
Score = 91.5 bits (100), Expect = 2e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370
||||| |||||||| | || |||||||| || || ||||| || ||||| || ||||||
Sbjct 5509 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 5568
Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATT 39405
|||| || || ||||||||||| ||||| |||||
Sbjct 5569 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 5603
>seq35785
Length=10255
Score = 96.9 bits (106), Expect = 5e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393
|||| |||| ||| || ||||||||||| || || || | || || || ||||| || |
Sbjct 2588 CACTGAATACTTTCTTAGTTTCCTTGTGCAAGTTGGACACCGCAATCCTTGCTGCCAGGA 2529
Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453
|||| |||||||| || | || || || || || |||| ||||| | |||||| |
Sbjct 2528 TAGCGTAGTCAGGGTGCTTGGTGGTCAGGGTCGCGGCCGTTTCAGCAGCCAGCGTATCCA 2469
Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
||| | || || || || | || ||||| ||||| ||||||||||
Sbjct 2468 GTTCCACTGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCATGG 2421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686254613817960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |