Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq23705 138 2e-27 seq29696 134 2e-26 seq35785 96.9 5e-15 >seq23705 Length=12823 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || ||||||||||| || || | ||| | Sbjct 9182 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 9123 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 9122 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 9063 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 9062 CAACCACTCTCTCACC 9047 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||||||| | ||||| || ||||||||||| ||||||||||||||||| ||||||||| Sbjct 6691 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTA 6632 Query 39854 AA 39855 || Sbjct 6631 AA 6630 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||||||| | ||||| || ||||||||||| ||||||||||||||||| ||||||||| Sbjct 6978 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTA 6919 Query 39854 AA 39855 || Sbjct 6918 AA 6917 >seq29696 Length=9771 Score = 134 bits (148), Expect = 2e-26 Identities = 104/124 (84%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | |||||||||||| |||||||||||||||| || | || | Sbjct 6809 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 6868 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| |||||||||||||| ||||| ||||||||||| | Sbjct 6869 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 6928 Query 39759 CAAC 39762 | || Sbjct 6929 CTAC 6932 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| |||||||| | || |||||||| || || ||||| || ||||| || |||||| Sbjct 5509 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 5568 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 |||| || || ||||||||||| ||||| ||||| Sbjct 5569 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 5603 >seq35785 Length=10255 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| |||| ||| || ||||||||||| || || || | || || || ||||| || | Sbjct 2588 CACTGAATACTTTCTTAGTTTCCTTGTGCAAGTTGGACACCGCAATCCTTGCTGCCAGGA 2529 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 |||| |||||||| || | || || || || || |||| ||||| | |||||| | Sbjct 2528 TAGCGTAGTCAGGGTGCTTGGTGGTCAGGGTCGCGGCCGTTTCAGCAGCCAGCGTATCCA 2469 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || | || ||||| ||||| |||||||||| Sbjct 2468 GTTCCACTGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCATGG 2421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686254613817960