Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq66148 168 8e-37
>seq66148
Length=2144
Score = 168 bits (186), Expect = 8e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||| ||||| || || |||||||| || || | ||||||||| | |
Sbjct 247 AATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAGGTTGAGCCCAG 306
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||||| |||| | ||||| || || ||||||||||| || |||||||| || ||
Sbjct 307 TGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCA 366
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || || || || || ||||| || || |||| || ||||| | ||||| ||
Sbjct 367 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 426
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| || ||||| || |||| || | |||||
Sbjct 427 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 474
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || || || || |||||| | ||
Sbjct 704 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 763
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | ||||| || || ||||||||||| || |||||||| || |||
Sbjct 764 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 823
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || || || || ||||| || || |||| || ||||| | ||||| ||
Sbjct 824 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 883
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| |||||||| || |||| || | |||||
Sbjct 884 ATCCAGAAGGAATCCACCCTTCATCTTGTGCTGCGCCTGAGGGGTGG 930
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || || || || |||||| | ||
Sbjct 476 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 535
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| |||| | ||||| || || ||||||||||| || |||||||| || |||
Sbjct 536 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 595
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || || || || ||||| || || |||| || ||||| | ||||| ||
Sbjct 596 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 655
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || ||||| || |||| || | |||||
Sbjct 656 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569767257761680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |