Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq46700 123 2e-23
seq42754 91.5 1e-13
>seq46700
Length=11970
Score = 123 bits (136), Expect = 2e-23
Identities = 122/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675
|||||| || |||||||| |||||||| | || |||||||| ||||| ||||| || |
Sbjct 8977 GACATGGGCAATCATGTATGTGAGCAGTGAATAGCTAGCAATATTGAAAGGCACTCCGAG 9036
Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735
||||||||||| || | |||||||| ||||| |||| || ||||| || |||||
Sbjct 9037 TCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACATAGAA 9096
Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773
||||| |||| ||||| || || | ||||||||||
Sbjct 9097 CTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGAG 9134
Score = 123 bits (136), Expect = 2e-23
Identities = 122/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631
|||||||||| | || || ||||| |||| ||||| ||||| || ||||| ||
Sbjct 9134 CTCTGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAAT 9075
Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691
|||| ||||| |||||||| | || ||||||||||| | || ||||| ||||| ||||
Sbjct 9074 TGTCTTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTCGGAGTGCCTTTCAATATTG 9015
Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729
|||| || | |||||||| |||||||| || ||||||
Sbjct 9014 CTAGCTATTCACTGCTCACATACATGATTGCCCATGTC 8977
>seq42754
Length=2386
Score = 91.5 bits (100), Expect = 1e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || || |||||||| ||||||||||| || || || || ||||| || ||||| ||
Sbjct 394 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCTTCT 453
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| | ||| ||| |||| ||||| || || || || || | ||| ||||| ||||||
Sbjct 454 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTC 513
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043
|| ||| | |||||||| ||||
Sbjct 514 ACACCCTTTGCAGAGAGCTCTTTGG 538
Score = 91.5 bits (100), Expect = 1e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361
|||| |||||||| | ||| |||||||| ||||| ||| | || || || || || |
Sbjct 538 CCAAAGAGCTCTCTGCAAAGGGTGTGAAGATTTGGGATGCTAATGGATCACGTGAGTTCC 479
Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421
|||| |||| ||| ||| | | || ||||| || ||||| || || || || ||||
Sbjct 478 TGGATAAGCAGGGTTTCAGCACCAGAGAAGAGGGGGATTTGGGACCAGTTTATGGTTTCC 419
Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446
||||||| |||||||| || || ||
Sbjct 418 AGTGGAGGCACTTTGGAGCAGAATA 394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447835491700080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |