Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq46700 123 2e-23 seq42754 91.5 1e-13 >seq46700 Length=11970 Score = 123 bits (136), Expect = 2e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || |||||||| |||||||| | || |||||||| ||||| ||||| || | Sbjct 8977 GACATGGGCAATCATGTATGTGAGCAGTGAATAGCTAGCAATATTGAAAGGCACTCCGAG 9036 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || | |||||||| ||||| |||| || ||||| || ||||| Sbjct 9037 TCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACATAGAA 9096 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773 ||||| |||| ||||| || || | |||||||||| Sbjct 9097 CTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGAG 9134 Score = 123 bits (136), Expect = 2e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631 |||||||||| | || || ||||| |||| ||||| ||||| || ||||| || Sbjct 9134 CTCTGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAAT 9075 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 |||| ||||| |||||||| | || ||||||||||| | || ||||| ||||| |||| Sbjct 9074 TGTCTTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTCGGAGTGCCTTTCAATATTG 9015 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||| || | |||||||| |||||||| || |||||| Sbjct 9014 CTAGCTATTCACTGCTCACATACATGATTGCCCATGTC 8977 >seq42754 Length=2386 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| || || || || ||||| || ||||| || Sbjct 394 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCTTCT 453 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || || || | ||| ||||| |||||| Sbjct 454 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTC 513 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| | |||||||| |||| Sbjct 514 ACACCCTTTGCAGAGAGCTCTTTGG 538 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | ||| |||||||| ||||| ||| | || || || || || | Sbjct 538 CCAAAGAGCTCTCTGCAAAGGGTGTGAAGATTTGGGATGCTAATGGATCACGTGAGTTCC 479 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| ||| | | || ||||| || ||||| || || || || |||| Sbjct 478 TGGATAAGCAGGGTTTCAGCACCAGAGAAGAGGGGGATTTGGGACCAGTTTATGGTTTCC 419 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| |||||||| || || || Sbjct 418 AGTGGAGGCACTTTGGAGCAGAATA 394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447835491700080