Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq66148 150 4e-31
seq74972 118 3e-21
>seq66148
Length=2144
Score = 150 bits (166), Expect = 4e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| ||||| ||||| |||||||| || |||| ||||| |||| || || | ||||||
Sbjct 460 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 401
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || |||||||| || | || || || || ||||| |||||||||||
Sbjct 400 TTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTC 341
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||| ||| ||| |||||||| || || || || || ||||| ||
Sbjct 340 CTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGT 281
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|||||| |||| || || | || | ||||||||
Sbjct 280 CTTGCCTGTCAGGGTCTTCACAAAGATCTGCATTTT 245
Score = 141 bits (156), Expect = 2e-28
Identities = 146/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| ||||| ||||| ||||| || || |||| ||||| |||| || || | ||||||
Sbjct 688 CAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 629
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || |||||||| || | || || || || ||||| |||||||||||
Sbjct 628 TTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTC 569
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||| ||| ||| |||||||| || || || || | ||||| ||
Sbjct 568 CTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGT 509
Query 225681 CTTGCCCGTCA 225691
|||||||||||
Sbjct 508 CTTGCCCGTCA 498
Score = 138 bits (152), Expect = 3e-27
Identities = 145/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| ||||| || || |||||||| || |||| ||||| |||| || || | ||||||
Sbjct 916 CAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 857
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || |||||||| || | || || || || ||||| |||||||||||
Sbjct 856 TTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTC 797
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||| ||| || |||||||| || || || || | ||||| ||
Sbjct 796 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGT 737
Query 225681 CTTGCCCGTCA 225691
|||||||||||
Sbjct 736 CTTGCCCGTCA 726
>seq74972
Length=1302
Score = 118 bits (130), Expect = 3e-21
Identities = 134/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610
|||| | || ||||| || |||| || |||||||| || || || ||||| | |||||
Sbjct 1287 CCAAATCTATAACGTAATCGTTACCGCCCATGCCTTCGTAATAATCTTCTTCATAGTTAT 1228
Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670
|| | || || || ||||||||||| ||| | ||||| | || ||||||||||||||
Sbjct 1227 ACCAATCATAATTGGAGGTTTCGGAAACTGACTGGTTCCACTCATAATTGGTGCTCCTGA 1168
Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730
|| || || || | | ||||| ||||| || ||| ||||||| || ||||| || ||
Sbjct 1167 CATAGCATTCCCCCGCATAAACAACATAAGCTTCTGACTACTACCCCCATCCTTCTTACT 1108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1191367084955166
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |