Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq66148 150 4e-31 seq74972 118 3e-21 >seq66148 Length=2144 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||| |||||||| || |||| ||||| |||| || || | |||||| Sbjct 460 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 401 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || |||||||| || | || || || || ||||| ||||||||||| Sbjct 400 TTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTC 341 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||| |||||||| || || || || || ||||| || Sbjct 340 CTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGT 281 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | || | |||||||| Sbjct 280 CTTGCCTGTCAGGGTCTTCACAAAGATCTGCATTTT 245 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||| ||||| || || |||| ||||| |||| || || | |||||| Sbjct 688 CAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 629 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || |||||||| || | || || || || ||||| ||||||||||| Sbjct 628 TTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTC 569 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||| |||||||| || || || || | ||||| || Sbjct 568 CTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGT 509 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 508 CTTGCCCGTCA 498 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || || |||||||| || |||| ||||| |||| || || | |||||| Sbjct 916 CAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 857 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || |||||||| || | || || || || ||||| ||||||||||| Sbjct 856 TTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTC 797 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || || || || | ||||| || Sbjct 796 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGT 737 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 736 CTTGCCCGTCA 726 >seq74972 Length=1302 Score = 118 bits (130), Expect = 3e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | || ||||| || |||| || |||||||| || || || ||||| | ||||| Sbjct 1287 CCAAATCTATAACGTAATCGTTACCGCCCATGCCTTCGTAATAATCTTCTTCATAGTTAT 1228 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || | || || || ||||||||||| ||| | ||||| | || |||||||||||||| Sbjct 1227 ACCAATCATAATTGGAGGTTTCGGAAACTGACTGGTTCCACTCATAATTGGTGCTCCTGA 1168 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || || || || | | ||||| ||||| || ||| ||||||| || ||||| || || Sbjct 1167 CATAGCATTCCCCCGCATAAACAACATAAGCTTCTGACTACTACCCCCATCCTTCTTACT 1108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191367084955166