Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq42754 102 7e-17
seq13461 87.8 1e-12
>seq42754
Length=2386
Score = 102 bits (112), Expect = 7e-17
Identities = 123/162 (76%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075
|| |||||||||||||| || || || ||||||| || |||||||| || ||||| |||
Sbjct 406 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCTTCTCTGGTGCT-GAA 464
Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
||| ||| |||| || || | || || || || ||||| ||||| || ||||| |
Sbjct 465 ACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACACCCTTTGC 524
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177
||||||||||||| ||||| || || || || || |||||
Sbjct 525 AGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 564
>seq13461
Length=29779
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| |||||||||||||| |||| || | |||||| | | ||| | |||||| || ||
Sbjct 27971 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 28030
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| || || |||||||||||| | ||||| ||||||
Sbjct 28031 ATGGAGAACCAGGTTTTCTTACCCATTATCAGTGCATTCTGTTTACCT 28078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405786055764454
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |