Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq42754 102 7e-17 seq13461 87.8 1e-12 >seq42754 Length=2386 Score = 102 bits (112), Expect = 7e-17 Identities = 123/162 (76%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 || |||||||||||||| || || || ||||||| || |||||||| || ||||| ||| Sbjct 406 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCTTCTCTGGTGCT-GAA 464 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || ||||| | Sbjct 465 ACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACACCCTTTGC 524 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||||||||||||| ||||| || || || || || ||||| Sbjct 525 AGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 564 >seq13461 Length=29779 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | |||||| | | ||| | |||||| || || Sbjct 27971 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 28030 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || |||||||||||| | ||||| |||||| Sbjct 28031 ATGGAGAACCAGGTTTTCTTACCCATTATCAGTGCATTCTGTTTACCT 28078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405786055764454