Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq29696 116 3e-21
seq23705 107 2e-18
>seq29696
Length=9771
Score = 116 bits (128), Expect = 3e-21
Identities = 107/134 (80%), Gaps = 1/134 (1%)
Strand=Plus/Plus
Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621
|| || |||| | ||||| || || |||||||||||||| || | ||| |||||||| ||
Sbjct 6802 ATTCATACCT-CATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCC 6860
Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681
||| || || |||||||| || | ||||| || ||||||||||| || ||||| || ||
Sbjct 6861 TCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGC 6920
Query 4682 GGCAAACGCTACTA 4695
||||| |||||||
Sbjct 6921 TGCAAAAGCTACTA 6934
Score = 102 bits (112), Expect = 7e-17
Identities = 85/104 (82%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| || ||||| || || ||||| |||||||| |||||||||||||| || |||
Sbjct 8973 TCTTTAATGTAGGTGTCAATAAGAAGGCTGTACATTTCTGAATGTATATTTTCCATGGCA 9032
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
||||| || || || || || | ||||||||| ||||| |||||
Sbjct 9033 ATCTGGAAGCCATAGAAACAACGAGCTTCTGTGACTTGTACTTC 9076
>seq23705
Length=12823
Score = 107 bits (118), Expect = 2e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || || || || | ||| ||||| | || ||||| ||
Sbjct 9180 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 9121
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
|||||||||||||| ||||| || || |||||||| |||||||| || || ||||| ||
Sbjct 9120 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 9061
Query 4692 AC 4693
||
Sbjct 9060 AC 9059
Score = 96.9 bits (106), Expect = 3e-15
Identities = 100/130 (77%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
||| |||||| || | |||||| ||||| || || ||||||||||||||||| |||| ||
Sbjct 4481 AAAGCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCCAGAA 4422
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
|||||| |||||||| | ||| || | || || || |||||||| | | || || |
Sbjct 4421 TATGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGAAAGGTCCTTTG 4362
Query 5041 TTAAATCAAC 5050
||||||||
Sbjct 4361 ACAAATCAAC 4352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426653061625937
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |