Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq29696 107 3e-18
seq23705 107 3e-18
seq35785 84.2 3e-11
>seq29696
Length=9771
Score = 107 bits (118), Expect = 3e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
||||||||||| || | |||||||||||| ||||| |||||||||| ||| | || ||
Sbjct 6811 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 6870
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
|||||||| || | || ||||| ||||||||||| || ||||| || || || || ||
Sbjct 6871 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 6930
Query 46774 AC 46775
||
Sbjct 6931 AC 6932
Score = 91.5 bits (100), Expect = 2e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383
||||| |||||||| | || ||||||||||| || ||||| || ||||| || ||||||
Sbjct 5509 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 5568
Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATT 46418
|||| || || |||||||| || ||||| |||||
Sbjct 5569 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 5603
>seq23705
Length=12823
Score = 107 bits (118), Expect = 3e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||||| | ||| || || || || || |||||||| || || | ||| ||
Sbjct 9180 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 9121
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
|||||||||||||| || || || || |||||||| |||||||| || || || || ||
Sbjct 9120 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 9061
Query 46774 ACAAGTCTCTCTCC 46787
|| | |||||| ||
Sbjct 9060 ACCACTCTCTCACC 9047
>seq35785
Length=10255
Score = 84.2 bits (92), Expect = 3e-11
Identities = 110/150 (73%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 76597 AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACG 76656
||| || ||||| ||||||||||| ||||| || |||| || || |||| || || |
Sbjct 8435 AACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 8376
Query 76657 TTCTTCATTTCCTGTATTCTT-TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATG 76715
||||| || || || ||||| |||||| || || ||||| | || || |||||||||
Sbjct 8375 CTCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATG 8317
Query 76716 GTTCTAGATATATCGCCATAACACCCGGTC 76745
| || || || || || | | | || ||||
Sbjct 8316 GCTCCAGGTAGATGGCAAAAGCCCCAGGTC 8287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712255428012480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |