Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq66148 141 2e-28
>seq66148
Length=2144
Score = 141 bits (156), Expect = 2e-28
Identities = 161/215 (75%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||||||||| || || || || ||||||||||| |||| | || | |||||||
Sbjct 915 AGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 856
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| ||||||||||| |||| | || |||||||| ||
Sbjct 855 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCC 796
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || |||||| |||| | | |||| ||| ||| ||||| || || ||
Sbjct 795 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATG 739
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| |||||||| || |||||||| |||| ||||||
Sbjct 738 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 704
Score = 136 bits (150), Expect = 9e-27
Identities = 160/215 (74%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| |||||||| || || ||||| || ||||||||||| |||| | || | |||||||
Sbjct 687 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 628
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| ||||||||||| |||| | || |||||||| ||
Sbjct 627 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCC 568
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || |||||| | || | | |||| ||| ||| ||||| || || ||
Sbjct 567 TGGATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATG 511
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| |||||||| || |||||||| |||| ||||||
Sbjct 510 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 476
Score = 123 bits (136), Expect = 6e-23
Identities = 159/218 (73%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| |||||||| || || || || || ||||||||||| |||| | || | |||||||
Sbjct 459 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 400
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| ||||||||||| |||| | || |||||||| ||
Sbjct 399 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCC 340
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || |||||| | || | | |||| ||| ||| || || | || ||
Sbjct 339 TGGATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCAACCTCCAAGGTGATG 283
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| ||||| || || |||||||| |||| |||||||||
Sbjct 282 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATTTT 245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1152694472946819
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |