Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq59062 172 8e-38
seq65818 122 1e-22
seq28214 89.7 7e-13
>seq59062
Length=24493
Score = 172 bits (190), Expect = 8e-38
Identities = 182/240 (76%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 9246 GAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAAC 9305
||||||||| || |||||||| ||||||||| ||| || ||||| || |||||||| |
Sbjct 3468 GAGTCGAGTAGTTTGGAACAGCTGCTCGTCATCCCACTCCGGATGCTCCTGTTTCAGGAT 3409
Query 9306 ATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTAC 9365
|| || || | |||||||||||| ||||| || || ||||||||||| | || || ||
Sbjct 3408 GTCACAGACTCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCCGGGAC 3349
Query 9366 CAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATA 9425
|| ||||| |||| || || |||| | | | || ||| ||||| | ||||| ||
Sbjct 3348 CAAACCAAACACCTCCTGCCCCACAGAAAACTGGAGGTGTTCAGGCACGTGAGGAGGGTA 3289
Query 9426 GATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485
|||||| | |||| ||| || |||| || ||||||||||| ||||||||||||||
Sbjct 3288 GATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCGTCAATCATCTG 3229
Score = 156 bits (172), Expect = 6e-33
Identities = 220/308 (71%), Gaps = 1/308 (0%)
Strand=Plus/Minus
Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348
|||| || | || ||||| || || |||||| | |||| || ||| | | |||
Sbjct 5476 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 5417
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
| |||| || | || ||||| ||| || |||||||| |||||||||||| | ||||
Sbjct 5416 TATTGATTATTTCAAAGCCCACTCTTCCACCAAAGGTGCTCGGCTTCCAGTACTCAGGGG 5357
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
||||||| | || |||| || || || || |||||||| || || | ||| | ||
Sbjct 5356 AGCAGATAGCATTTCCCATCAGTCCCTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 5297
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
| |||||||||||||| || ||||||||||| || | || || | ||||||||||
Sbjct 5296 TTTCACCGAAGATGGCACCTGGCCGGGGCTTTTCTACGAGGAGGCCTGGATACAGCTCCA 5237
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587
||| || | |||||| ||||| | ||||| || || || || |||||||||||
Sbjct 5236 TAGCGTCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 5177
Query 8588 TTATTAAT 8595
||||| ||
Sbjct 5176 TTATTGAT 5169
Score = 87.8 bits (96), Expect = 3e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||||| || || | || || ||||| || || || || || || | ||||
Sbjct 1515 TCACCTTTAACACCCATTGGTGTCGGACAGTCATGTCCCACTGGCGGAAGGCTTCTTGTA 1456
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
|||||||| |||||||| |||||||||||||| ||| | ||| || |||||| |
Sbjct 1455 TAATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAATTGTAATCACTGTTGTAAGTT 1396
Query 10028 GGAGGGCTGTCAATCAAATCGGATCT 10053
|| |||||||||||||| | |||||
Sbjct 1395 GGTGGGCTGTCAATCAAGTGTGATCT 1370
>seq65818
Length=2167
Score = 122 bits (134), Expect = 1e-22
Identities = 168/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| ||||| | |||||| |||| |||||||| || |||||||| ||||| |||||
Sbjct 312 TCACCGATGAGGATGAGACGAGCCGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGC 253
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| ||||||| | ||||| || | |||||| || | ||||||| |||||||||||
Sbjct 252 TCCCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 193
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411
|||||| || | ||| ||||| |||| || || | ||||| || | | | |||
Sbjct 192 CAGAGCCCCGGCAGCAGCCCAAACACCTCCTGCCCCATCGCCAGCTGCTTCTCCTTGGGG 133
Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACA 9466
|| | || |||| |||||| ||| | | || |||| | |||||||||||
Sbjct 132 ACGGTAGATGGGTAGACCATGTGGACCAGAGCATCGGTGACTGTGGGGGGATACA 78
>seq28214
Length=2975
Score = 89.7 bits (98), Expect = 7e-13
Identities = 141/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
|||| || ||| | || ||| |||||||||| || ||||| ||||||||| | ||||
Sbjct 2469 TCTTAACTATCTCAAAGCCCGTTGCTCCGCCGAATGTACTGGGTTTCCAGTACTCTGGGG 2528
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||||||| || | | || || || ||||| |||||||| |||| ||| | ||||
Sbjct 2529 AGCAGATGGGATTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCCATCTCCACCATGC 2588
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
| || || || || | || || | || || || | || || || || | |||||
Sbjct 2589 TTTCCCCAAAAATACCATTAGGTTGAGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 2648
Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550
||| || | |||||| || ||
Sbjct 2649 GAGCATCAATGTCTCCATACAG 2670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716194073418560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |