Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq59062 172 8e-38 seq65818 122 1e-22 seq28214 89.7 7e-13 >seq59062 Length=24493 Score = 172 bits (190), Expect = 8e-38 Identities = 182/240 (76%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 9246 GAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAAC 9305 ||||||||| || |||||||| ||||||||| ||| || ||||| || |||||||| | Sbjct 3468 GAGTCGAGTAGTTTGGAACAGCTGCTCGTCATCCCACTCCGGATGCTCCTGTTTCAGGAT 3409 Query 9306 ATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTAC 9365 || || || | |||||||||||| ||||| || || ||||||||||| | || || || Sbjct 3408 GTCACAGACTCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCCGGGAC 3349 Query 9366 CAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATA 9425 || ||||| |||| || || |||| | | | || ||| ||||| | ||||| || Sbjct 3348 CAAACCAAACACCTCCTGCCCCACAGAAAACTGGAGGTGTTCAGGCACGTGAGGAGGGTA 3289 Query 9426 GATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485 |||||| | |||| ||| || |||| || ||||||||||| |||||||||||||| Sbjct 3288 GATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCGTCAATCATCTG 3229 Score = 156 bits (172), Expect = 6e-33 Identities = 220/308 (71%), Gaps = 1/308 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || |||||| | |||| || ||| | | ||| Sbjct 5476 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 5417 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| ||| || |||||||| |||||||||||| | |||| Sbjct 5416 TATTGATTATTTCAAAGCCCACTCTTCCACCAAAGGTGCTCGGCTTCCAGTACTCAGGGG 5357 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || || || || |||||||| || || | ||| | || Sbjct 5356 AGCAGATAGCATTTCCCATCAGTCCCTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 5297 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | |||||||||||||| || ||||||||||| || | || || | |||||||||| Sbjct 5296 TTTCACCGAAGATGGCACCTGGCCGGGGCTTTTCTACGAGGAGGCCTGGATACAGCTCCA 5237 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 5236 TAGCGTCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 5177 Query 8588 TTATTAAT 8595 ||||| || Sbjct 5176 TTATTGAT 5169 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || || ||||| || || || || || || | |||| Sbjct 1515 TCACCTTTAACACCCATTGGTGTCGGACAGTCATGTCCCACTGGCGGAAGGCTTCTTGTA 1456 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||| |||||||| |||||||||||||| ||| | ||| || |||||| | Sbjct 1455 TAATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAATTGTAATCACTGTTGTAAGTT 1396 Query 10028 GGAGGGCTGTCAATCAAATCGGATCT 10053 || |||||||||||||| | ||||| Sbjct 1395 GGTGGGCTGTCAATCAAGTGTGATCT 1370 >seq65818 Length=2167 Score = 122 bits (134), Expect = 1e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || |||||||| ||||| ||||| Sbjct 312 TCACCGATGAGGATGAGACGAGCCGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGC 253 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||||| | ||||| || | |||||| || | ||||||| ||||||||||| Sbjct 252 TCCCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 193 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | ||| ||||| |||| || || | ||||| || | | | ||| Sbjct 192 CAGAGCCCCGGCAGCAGCCCAAACACCTCCTGCCCCATCGCCAGCTGCTTCTCCTTGGGG 133 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACA 9466 || | || |||| |||||| ||| | | || |||| | ||||||||||| Sbjct 132 ACGGTAGATGGGTAGACCATGTGGACCAGAGCATCGGTGACTGTGGGGGGATACA 78 >seq28214 Length=2975 Score = 89.7 bits (98), Expect = 7e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| || ||| | || ||| |||||||||| || ||||| ||||||||| | |||| Sbjct 2469 TCTTAACTATCTCAAAGCCCGTTGCTCCGCCGAATGTACTGGGTTTCCAGTACTCTGGGG 2528 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| || | | || || || ||||| |||||||| |||| ||| | |||| Sbjct 2529 AGCAGATGGGATTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCCATCTCCACCATGC 2588 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || || | || || | || || || | || || || || | ||||| Sbjct 2589 TTTCCCCAAAAATACCATTAGGTTGAGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 2648 Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550 ||| || | |||||| || || Sbjct 2649 GAGCATCAATGTCTCCATACAG 2670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716194073418560