Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq66148 145 2e-29 >seq66148 Length=2144 Score = 145 bits (160), Expect = 2e-29 Identities = 164/217 (76%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || || ||||| || || |||||| | ||||| || Sbjct 245 AAAATGC---AGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAGGTTGA- 300 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| || || ||||| ||||| |||||||| ||||| || |||| Sbjct 301 -GCCCAGTGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTC 359 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 |||| ||||| | || ||||||||||| || ||||| |||||||| | || || ||| Sbjct 360 CGGATCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCG 419 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| || ||||| || || |||||||| Sbjct 420 ACTACAACATCCAGAAGGAATCCACCCTCCATCTTGT 456 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| || || || || ||| Sbjct 707 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTTGA--GCCCAGTG 764 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||| ||||| || |||||||| |||| Sbjct 765 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAGC 824 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| |||||||| | || || |||| || ||| Sbjct 825 AGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 884 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 885 TCCAGAAGGAATCCACCCTTCATCTTGT 912 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| || || || || ||| Sbjct 479 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTTGA--GCCCAGTG 536 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || || ||||| ||||| |||||||| ||||| || |||||||| |||| Sbjct 537 ACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAGC 596 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| |||||||| | || || |||| || ||| Sbjct 597 AGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 656 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || |||||||| Sbjct 657 TCCAGAAGGAGTCCACCCTCCATCTTGT 684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202556151833666