Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq307243 127 1e-24
seq154869 98.7 7e-16
>seq307243
Length=4399
Score = 127 bits (140), Expect = 1e-24
Identities = 101/120 (84%), Gaps = 1/120 (1%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| || ||| ||||||| |||| |||||||||| |||||||||| ||||||||||||||
Sbjct 2479 CTTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGG 2538
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGA 4409
||| |||||||| || ||| ||||||| |||| | |||||||||| || | |||| |||
Sbjct 2539 AATGGAGAACCACGTTTTTCTACCCATTATCAGTGCATTCTGTTTACCT-GAACAGGAGA 2597
>seq154869
Length=4943
Score = 98.7 bits (108), Expect = 7e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092
|||| ||||||||||| |||||||||||||| || |||||||| ||||| | ||| || |
Sbjct 4441 CTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCT 4382
Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152
| |||||| ||||| | ||||| | || | || ||||| ||||||||||
Sbjct 4381 CCTCTCTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGGGACCCATTAGCATCCCAAA 4322
Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181
| | ||| || ||| || |||||||||
Sbjct 4321 TCTTCACCCCTTTTGCAGAGAGCTCTTTG 4293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359893039988480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |