Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq190411 123 3e-23
seq308081 100 3e-16
>seq190411
Length=5012
Score = 123 bits (136), Expect = 3e-23
Identities = 169/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178
|||| |||||||| || | | |||||||||||||||||| || | ||| ||||||||
Sbjct 4690 GGGCACGCCGTCAGGGCCAATGAGGAACTTCTCGAAGTTCCAAGCGATGTCATTGCGGCA 4749
Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238
|| || |||||| ||| ||| |||| | ||| |||| | ||| ||| ||
Sbjct 4750 GACCGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGAGGAGGGGTCATCGTGCGG 4809
Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298
||||| |||||| ||||| | |||||| || ||||| | ||||| |||||
Sbjct 4810 GAAGGGCAGTGCCTCTTTCAGGAAAGTGAAGAGGGGGTGTGCGTTCTTCCCGTTCACCTC 4869
Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354
|||||||||||| | || || || |||| | | || || |||||||| |||| ||
Sbjct 4870 GCACTTCTCGAACATTATGAAATTGGGCTTGTACCCCTTGCCAGGACGAACGTTCT 4925
>seq308081
Length=6447
Score = 100 bits (110), Expect = 3e-16
Identities = 116/154 (75%), Gaps = 3/154 (2%)
Strand=Plus/Minus
Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447
|| |||||| || ||||||||||| ||||| || ||||| ||||||| ||| | ||
Sbjct 4621 TTACCTGGTATCCAAACTGGTTACAGGGGAAGCCCAGCACGACCAGCCGCCGGG--GGTA 4564
Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507
||| || |||| ||| | ||| ||||| ||||| |||||| | |||||||| || |
Sbjct 4563 -GCGGGCTTGGAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGTGAAG 4505
Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541
| |||||||| || || | || |||||||| ||
Sbjct 4504 CCACGTTCTCAATCAGGACCACGCGGCCCCGGAA 4471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 606449279539200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |