Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_001987.1
Length=108409
Score E
Sequences producing significant alignments: (Bits) Value
seq154869 89.7 4e-13
seq302870 86.0 4e-12
>seq154869
Length=4943
Score = 89.7 bits (98), Expect = 4e-13
Identities = 109/148 (74%), Gaps = 8/148 (5%)
Strand=Plus/Minus
Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461
||||||||||||||||||||||| ||||| ||||| || ||||| | || || || |||
Sbjct 4436 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 4377
Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517
|| | |||||| ||||||| |||| || || ||||| |||||||||||
Sbjct 4376 CTGGTGCTGAAACCCTGCTTATC----CAGGAACTCACGGGACCCATTAGCATCCCAAAT 4321
Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545
| ||| || ||| | |||||||||
Sbjct 4320 CTTCACCCCTTTTGCAGAGAGCTCTTTG 4293
>seq302870
Length=2297
Score = 86.0 bits (94), Expect = 4e-12
Identities = 114/156 (73%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176
||||||||||| ||||| | || | || |||||||| ||||| || |||||||| |||
Sbjct 606 GTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCT 547
Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA-TCACACACATA 97235
|||||||| || | || || ||||| | || || || | | ||| ||| | |||||
Sbjct 546 AGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTCAGA-ACATA 488
Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271
||||| | | |||| || || ||||| |||||
Sbjct 487 GAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCAT 452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 345480230873600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |