Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq1870 102 1e-16
>seq1870
Length=13139
Score = 102 bits (112), Expect = 1e-16
Identities = 104/133 (78%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116
|| ||||| |||||||| | || | ||||| ||||| |||||||||| ||||||||
Sbjct 2794 GCTTTTTTCGGAGCTCAAATGAACGCATTTATTCATGTCATTATGTACATGTATTATGGA 2853
Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175
| || |||||||| |||| || |||||| || || ||||||||||| ||| | || ||
Sbjct 2854 TTAGCAGCTTGTGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAACGATATTTGACCAT 2912
Query 52176 AATGCAGTTGGTA 52188
| |||| ||||||
Sbjct 2913 ATTGCAATTGGTA 2925
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244
||| ||||||||| | |||| || || || || |||| ||||| || ||||| || ||
Sbjct 3430 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATCGATTGTCCTTT 3489
Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304
|| |||||||| || ||| || ||| ||||| || | | || || || ||||||||
Sbjct 3490 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTGTCACCTTTATTTTCCTGTTTGG 3549
Query 52305 TAACTTCTATTTTAGAACATACAAG 52329
||||||||| | | | ||||| |||
Sbjct 3550 TAACTTCTACTATCGGACATATAAG 3574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 919636953139200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |