Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq80383 111 2e-19 >seq80383 Length=14604 Score = 111 bits (122), Expect = 2e-19 Identities = 160/221 (72%), Gaps = 26/221 (12%) Strand=Plus/Plus Query 139506 TGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggtt--gc-ccc 139562 ||| || ||| ||||| |||| | | ||||| || || | ||||| | | || ||| Sbjct 11354 TGTCGGGGCGGCGCCGACCGCACACTCCACGTTTCACGGAGCCGCGGCTGCTCAGCGCCC 11413 Query 139563 gggggcgccgctcccgtgttgctctgctgggg-----------gcgcggggccg-cgcgc 139610 | |||||||| |||| |||||||||||||| || | ||| | || || Sbjct 11414 CGAGGCGCCGCGCCCGCTTTGCTCTGCTGGGGTTCTCCCGGCTGCTCAGGGTGGGCGGGC 11473 Query 139611 CG--CATC---TCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAAT 139665 || | || |||| | |||||||||||||||||||| ||||||||||||||||||| Sbjct 11474 CGGCCCTCGGGTCCCCGCCGCCGCCGAGGCTGACAGAGACGAACTCTTCGCGGCGGCAGC 11533 Query 139666 GGCG-GGTGCCGGCCGACCGCGGCCTGC-----GGGCGAGG 139700 |||| | ||| |||||||||||||||| |||||||| Sbjct 11534 GGCGCTGAGCCTGCCGACCGCGGCCTGCACGAGGGGCGAGG 11574 Score = 111 bits (122), Expect = 2e-19 Identities = 160/221 (72%), Gaps = 26/221 (12%) Strand=Plus/Minus Query 1920 CCTCGCCC-----GCAGGCCGCGGTCGGCCGGCACC-CGCCATTGCCGCCGCGAAGAGTT 1973 |||||||| |||||||||||||||| ||| | |||| ||||||||||||||||| Sbjct 11574 CCTCGCCCCTCGTGCAGGCCGCGGTCGGCAGGCTCAGCGCCGCTGCCGCCGCGAAGAGTT 11515 Query 1974 CGCCTCTGTCAGCCTCGGCGGCGCCCGGGA---GATG--CGgcgcg-cggccccgcgc-- 2025 || |||||||||||||||||||| | |||| || | |||| || | ||| | || Sbjct 11514 CGTCTCTGTCAGCCTCGGCGGCGGCGGGGACCCGAGGGCCGGCCCGCCCACCCTGAGCAG 11455 Query 2026 ---------ccccagcagagcaacacgggagcggcgcccccggg-gc--aacccccgcgc 2073 |||||||||||||| |||| |||||||| | ||| || | | ||||| Sbjct 11454 CCGGGAGAACCCCAGCAGAGCAAAGCGGGCGCGGCGCCTCGGGGCGCTGAGCAGCCGCGG 11395 Query 2074 cccccTGCGCCGTGGGGCGCGCGGACGGCGTCGCTCCCACA 2114 | || || ||||| | | |||| ||||| ||| || ||| Sbjct 11394 CTCCGTGAAACGTGGAGTGTGCGGTCGGCGCCGCCCCGACA 11354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566874470707200