Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_002229.3
Length=177874
Score E
Sequences producing significant alignments: (Bits) Value
seq80383 111 2e-19
>seq80383
Length=14604
Score = 111 bits (122), Expect = 2e-19
Identities = 160/221 (72%), Gaps = 26/221 (12%)
Strand=Plus/Plus
Query 139506 TGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggtt--gc-ccc 139562
||| || ||| ||||| |||| | | ||||| || || | ||||| | | || |||
Sbjct 11354 TGTCGGGGCGGCGCCGACCGCACACTCCACGTTTCACGGAGCCGCGGCTGCTCAGCGCCC 11413
Query 139563 gggggcgccgctcccgtgttgctctgctgggg-----------gcgcggggccg-cgcgc 139610
| |||||||| |||| |||||||||||||| || | ||| | || ||
Sbjct 11414 CGAGGCGCCGCGCCCGCTTTGCTCTGCTGGGGTTCTCCCGGCTGCTCAGGGTGGGCGGGC 11473
Query 139611 CG--CATC---TCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAAT 139665
|| | || |||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct 11474 CGGCCCTCGGGTCCCCGCCGCCGCCGAGGCTGACAGAGACGAACTCTTCGCGGCGGCAGC 11533
Query 139666 GGCG-GGTGCCGGCCGACCGCGGCCTGC-----GGGCGAGG 139700
|||| | ||| |||||||||||||||| ||||||||
Sbjct 11534 GGCGCTGAGCCTGCCGACCGCGGCCTGCACGAGGGGCGAGG 11574
Score = 111 bits (122), Expect = 2e-19
Identities = 160/221 (72%), Gaps = 26/221 (12%)
Strand=Plus/Minus
Query 1920 CCTCGCCC-----GCAGGCCGCGGTCGGCCGGCACC-CGCCATTGCCGCCGCGAAGAGTT 1973
|||||||| |||||||||||||||| ||| | |||| |||||||||||||||||
Sbjct 11574 CCTCGCCCCTCGTGCAGGCCGCGGTCGGCAGGCTCAGCGCCGCTGCCGCCGCGAAGAGTT 11515
Query 1974 CGCCTCTGTCAGCCTCGGCGGCGCCCGGGA---GATG--CGgcgcg-cggccccgcgc-- 2025
|| |||||||||||||||||||| | |||| || | |||| || | ||| | ||
Sbjct 11514 CGTCTCTGTCAGCCTCGGCGGCGGCGGGGACCCGAGGGCCGGCCCGCCCACCCTGAGCAG 11455
Query 2026 ---------ccccagcagagcaacacgggagcggcgcccccggg-gc--aacccccgcgc 2073
|||||||||||||| |||| |||||||| | ||| || | | |||||
Sbjct 11454 CCGGGAGAACCCCAGCAGAGCAAAGCGGGCGCGGCGCCTCGGGGCGCTGAGCAGCCGCGG 11395
Query 2074 cccccTGCGCCGTGGGGCGCGCGGACGGCGTCGCTCCCACA 2114
| || || ||||| | | |||| ||||| ||| || |||
Sbjct 11394 CTCCGTGAAACGTGGAGTGTGCGGTCGGCGCCGCCCCGACA 11354
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566874470707200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |