Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq81380 105 6e-18
seq22071 93.3 4e-14
seq82011 89.7 5e-13
>seq81380
Length=7807
Score = 105 bits (116), Expect = 6e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947
||||||| ||| |||| || ||||| || || | | || |||||| | | ||
Sbjct 4005 AAAAATCTGCATCCAGAGTGAAGACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 3946
Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007
||||||| ||| | ||| ||||||||||||||||||||||| | |||||||| ||||
Sbjct 3945 GATATTCCGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTCCA 3886
Query 16008 TAAAATCAAAAGGATTTTTTG 16028
| |||||||||||||||| ||
Sbjct 3885 TGAAATCAAAAGGATTTTCTG 3865
>seq22071
Length=8576
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | || || || || || | || ||||| || || | || ||
Sbjct 8417 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 8358
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| |||||||||||| ||||| ||||| |||||||| || ||||| ||||| ||||| |||
Sbjct 8357 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 8298
Query 16379 ACCAATCGCTCACC 16392
|||| || ||||||
Sbjct 8297 ACCACTCTCTCACC 8284
>seq82011
Length=15829
Score = 89.7 bits (98), Expect = 5e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563
||| ||||| || || || | ||| |||||||||||||| ||||| ||||| || |||||
Sbjct 14290 AATGTAAGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTG 14349
Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602
|| ||||| || || | |||||| | |||||||||||
Sbjct 14350 GAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 14388
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985
|| ||||| ||| ||| | |||||||||| |||| ||| |||||||||||||| ||
Sbjct 11397 TTCGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTTGTCTTG 11456
Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023
||||| | || || |||||||| || |||||||||||
Sbjct 11457 CCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 11494
Score = 86.0 bits (94), Expect = 6e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || ||||| || | || || ||||| || || || ||||||| ||||| ||| ||
Sbjct 12615 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 12674
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| |||||| || | ||||| || ||||||||||| || ||||| || || ||||| ||
Sbjct 12675 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAGGCT 12734
Query 16379 AC 16380
||
Sbjct 12735 AC 12736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 460728553728000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |