Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq303695 345 3e-90 seq18740 91.5 1e-13 >seq303695 Length=2500 Score = 345 bits (382), Expect = 3e-90 Identities = 648/947 (68%), Gaps = 14/947 (1%) Strand=Plus/Minus Query 107683 AGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATG 107742 |||| || || || | || ||| || |||||||| |||||||| ||||| ||||| Sbjct 1775 AGTTTCCGCTCAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGGTCATCCATC 1716 Query 107743 AGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACT 107802 | || || || | ||||| ||||| || || |||| || ||||| ||||| | |||| Sbjct 1715 ACAAAATCGACATGTTTGAGCGGCTTCTACGGTCCGTCTACGCCCCCCAGAATGTCTACT 1656 Query 107803 GTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTT 107862 ||||||| |||| || ||||| | | ||| | ||||| || | |||||| | Sbjct 1655 GTGTCCATATGGACAGCAAATCCCCGGCCGCCTTCCAGGAGGCCGTGAGAGCCATTGCTG 1596 Query 107863 CCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGT 107922 ||||||||||||| |||||| ||||||| ||| ||||| |||||| |||||| Sbjct 1595 CCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAGAGCGTGGTCTATGCCGCCTGGT 1536 Query 107923 CCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGA 107982 || | |||| || ||||| ||||| ||| | ||| |||| |||||| | ||||||||| Sbjct 1535 CCCGGCTGCAGGCCGACCTTAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGCCATGGC 1476 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||| | | || || ||||| || ||||||||||| |||||||| |||||||| |||| Sbjct 1475 GCTACCTCATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGATAGTCC 1416 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCa 108102 | | || || || || |||| | |||| ||||||| | | || || | | | | Sbjct 1415 GGACGCTGCAGCTGCTGCAGGGCCACAACAACGTGGAGTCGGTGAAGCCCTCCGCGGCGA 1356 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGT--GACAGACACACTGTACCCTACCAGCAA 108160 | | | |||||| |||| ||| ||||| | ||||| || | | | || | | Sbjct 1355 AGGAGCAGCGCTGGCTGTACCACTACGAGGTGGGGCAGAC-CA-TCTCTCGCACTGCCCA 1298 Query 108161 GATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGC 108220 || ||| || || || | | | ||||||||||| || | || || Sbjct 1297 GAAGAAACTGCCGCCACCCCACAGCTACCCCATGTTCACGGGCAGCGCGTACAACACATT 1238 Query 108221 CTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATG 108280 | | || | |||||| || | ||||| || ||||| | | || | | | || || Sbjct 1237 CACACGGGACTTTGTGCAGTACGTCTTCGAGAACCCCACGGCACAGAAGTTCCTCGAGTG 1178 Query 108281 GGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTG 108340 | ||| |||| ||| ||||| ||||| ||| ||||||||||||| | || ||| | Sbjct 1177 GTCCAAGGACAGCTACAGCCCTGACGAGCACGTCTGGGCCACCCTGAACCGCATGCCGGG 1118 Query 108341 GATGCCTGG-----CTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCC 108395 |||| || | | ||| ||| | |||||| || |||| ||||||| ||| Sbjct 1117 TGTGCCGGGGGGCACGCCCTTC--AGCGA---CAAGTACCAGCTCTCGGACATGAACGCC 1063 Query 108396 ATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTAT 108455 | || | || ||||||||||||| | ||||| || |||||| ||| ||| | || Sbjct 1062 CTTCCCCGCCTAGTCAAGTGGCAGTTCATGGAGGGGGACATCAGCAAGGGCGCGTCCTAC 1003 Query 108456 GCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTAC 108515 | || ||| | || ||| | | | ||| ||||||| ||||||| || ||| || | Sbjct 1002 CCGCCTTGCACCGGCCGCCACCAGCGCGCCGTCTGCATCTACGGGGTGGGCGACGTGCCC 943 Query 108516 TGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAAC 108575 ||||| || ||| | || || |||||||| |||||||| ||||| |||||| ||| Sbjct 942 TGGATGCTGCAGCAGCACCATCTCTTGGCCAACAAGTTCGACCCCGAGGTGGACGATGCG 883 Query 108576 GTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 | | | ||||| | || |||||||| || || |||||| | || || Sbjct 882 GCCGTCCAGTGTCTCGAGGAGTACCTGCGCCACAAGGCCCTGTACGG 836 >seq18740 Length=6788 Score = 91.5 bits (100), Expect = 1e-13 Identities = 228/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||||| ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 6355 CCTCTCAGTAATGAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAA 6296 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | ||||| || ||||| | ||||| || Sbjct 6295 ATTGAGATGCTTGATAGACTTCTAAGATCAATATATGCTCCACAGAATTTTTACTGCATC 6236 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| | || | || || |||| || | || || Sbjct 6235 CATGTAGACAAAAAGTCTCCAGAATCCTTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 6176 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | ||||| ||||| || ||| |||| Sbjct 6175 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTGGTATATGCTTCATGGAGCAGA 6116 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| | || |||| ||| | | ||||| | Sbjct 6115 GTGCAGGCAGACATTAACTGCATGAAAGATCT-CTACAGAAGA-AGTTCAAACTGGAAAT 6058 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || | || ||| || | ||||| || ||||||||||| Sbjct 6057 ATCTAATAAACCTATGTGGTATGGACTTTCCTATAAAGACCAA 6015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346959448619520