Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq192473 123 2e-23 seq155070 89.7 5e-13 >seq192473 Length=894 Score = 123 bits (136), Expect = 2e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| || ||| |||||||| || || ||||| || || ||||| ||||| || | Sbjct 434 CCACCTCCTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 493 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||||| || ||||||||| || | ||||| || ||||||||||||||||| || | Sbjct 494 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 553 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||| ||||| ||| ||||||||||| || Sbjct 554 TGCCAGTCTCAGTCTGGGACTCGATGATGGC 584 >seq155070 Length=997 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || ||||| || ||||| || || ||||||| || | ||| ||| ||| || | Sbjct 638 TCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTGCTCTTCCT 579 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 | || |||||||| |||| |||| || || || | |||| ||||||||||| | || Sbjct 578 TCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAAGT 519 Query 23472 AAACGGCAAACGCGCCCGGTCTCT 23495 | | |||||| || || || |||| Sbjct 518 AGATGGCAAAAGCCCCAGGCCTCT 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444047524761600