Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq192473 123 2e-23
seq155070 89.7 5e-13
>seq192473
Length=894
Score = 123 bits (136), Expect = 2e-23
Identities = 118/151 (78%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105
||||||| || ||| |||||||| || || ||||| || || ||||| ||||| || |
Sbjct 434 CCACCTCCTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 493
Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165
|||||| || ||||||||| || | ||||| || ||||||||||||||||| || |
Sbjct 494 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 553
Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196
|||| ||||| ||| ||||||||||| ||
Sbjct 554 TGCCAGTCTCAGTCTGGGACTCGATGATGGC 584
>seq155070
Length=997
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411
|||| || ||||| || ||||| || || ||||||| || | ||| ||| ||| || |
Sbjct 638 TCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTGCTCTTCCT 579
Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471
| || |||||||| |||| |||| || || || | |||| ||||||||||| | ||
Sbjct 578 TCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAAGT 519
Query 23472 AAACGGCAAACGCGCCCGGTCTCT 23495
| | |||||| || || || ||||
Sbjct 518 AGATGGCAAAAGCCCCAGGCCTCT 495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444047524761600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |