Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq154213 114 2e-20 seq22071 114 2e-20 seq82011 111 2e-19 seq155070 93.3 6e-14 >seq154213 Length=412 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 9456 AAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGT 9515 |||||| || |||||| | |||||||||| ||| ||||| |||||||||||||| Sbjct 143 AAAATCATGAATATAACAACATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTTGATTGC 202 Query 9516 AGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACG 9575 | ||||||||||||| ||||||| || |||||||| || || || ||||||| ||| Sbjct 203 AAGGTATATGCAGTCAATCCAAGAAATACAGCAGTAGTAAGAATAAAGGCTTGCAAGACG 262 Query 9576 ACATGCACATCATAGAAA 9593 || |||||||||||| Sbjct 263 ACGGAGACATCATAGAAA 280 >seq22071 Length=8576 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 8419 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 8360 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 8359 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 8300 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 8299 CAACCACTCTCTCACC 8284 >seq82011 Length=15829 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 12613 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 12672 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 12673 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAGG 12732 Query 36300 C 36300 | Sbjct 12733 C 12733 >seq155070 Length=997 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATG 66118 ||||| ||||| ||||||||||| ||||| || || | || | || |||| || || Sbjct 646 CACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTG 587 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || || ||||| ||||| || || || |||||| | | || || | |||||||| Sbjct 586 CTCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGG 527 Query 66179 TTCCAAGTATATGGCCATAACTCCAGGCC 66207 |||||||| ||||| | | | ||||||| Sbjct 526 CTCCAAGTAGATGGCAAAAGCCCCAGGCC 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655634885683200