Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq22071 129 8e-25
seq82011 120 4e-22
seq155070 96.9 5e-15
seq164438 93.3 6e-14
seq267860 87.8 2e-12
>seq22071
Length=8576
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| |
Sbjct 8419 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 8360
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||||||||||| ||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 8359 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 8300
Query 42207 CAATAAGTCTCTCTCC 42222
||| | |||||| ||
Sbjct 8299 CAACCACTCTCTCACC 8284
>seq82011
Length=15829
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
||||||||||||| || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 12613 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 12672
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| |||||||| || || ||||| || |||||||||||||||||||| || || |||||||
Sbjct 12673 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAGG 12732
Query 42207 C 42207
|
Sbjct 12733 C 12733
Score = 86.0 bits (94), Expect = 8e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818
||||| |||||||| | || |||||||| || || || || || ||||| ||||| |||
Sbjct 11400 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTTGTCTTGCCT 11459
Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853
|||| || || ||||||||||| ||||| |||||
Sbjct 11460 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 11494
Score = 84.2 bits (92), Expect = 3e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376
|| ||| ||| |||| || || || || | |||||| |||||||||||||| || |||
Sbjct 14276 TCTTTAGAATCCTTAATGTAAGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTT 14335
Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430
|| ||||| ||||| || || |||||||| | || || || | |||||||||
Sbjct 14336 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 14389
>seq155070
Length=997
Score = 96.9 bits (106), Expect = 5e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
|||| ||||| ||||||||||| ||||| || || | || || || |||| || |||
Sbjct 645 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTGC 586
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || || ||||| ||||| || || || |||||| | | || || | ||||||||
Sbjct 585 TCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 526
Query 72142 TCCAAGTATATGGCCATAACTCCCGGCC 72169
|||||||| ||||| | | | || ||||
Sbjct 525 TCCAAGTAGATGGCAAAAGCCCCAGGCC 498
>seq164438
Length=463
Score = 93.3 bits (102), Expect = 6e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| ||||| || ||||| || || || ||| ||| | || ||||| ||||| || |
Sbjct 58 TCCAGCCGTAGAAGTGCATGCTGGTCAGCTTGCCGTAGTTGGGCTCGGCGATGTGGATGT 117
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
||| ||||| || || ||||||||||| || |||||||| ||||| || | ||| || |
Sbjct 118 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCTGCCATCTTCAGGATGGTTT 177
Query 70988 TTTGTGGAATTTCCCA 71003
| || | || |||||
Sbjct 178 TCTGGGAGATCTCCCA 193
>seq267860
Length=578
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
|||| || | || || || |||||||| || || || ||||| || | |||||| || |
Sbjct 331 CACTGAAGACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCGATGCGGGCGGCCAGGA 272
Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880
|||| || || || || | || || ||||| || | ||||| |||||||||||||
Sbjct 271 TGGCGTAGTCGGGGTGCTTGGTGGTCAGCGTGGCCGCCGTCTCTGCGGCCAGAGTGTCCA 212
Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926
|| ||||| || || || | || | || ||||| ||||||||
Sbjct 211 GCTCCACCGTGGTGACCCCGCTGTACAGCCCCTGGATCACCTTCAT 166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 668551287244800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |