Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq155070 87.8 3e-12 seq192473 84.2 3e-11 seq22071 84.2 3e-11 >seq155070 Length=997 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 96892 GGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCG 96951 |||| || ||| | ||| |||||||||| || |||||| |||| | ||||| || | | Sbjct 498 GGCCTGGGGCTTTTGCCATCTACTTGGAGCCGTGGCACTTGGACATCTTTGAGTTCCTGG 557 Query 96952 AGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCT 97011 | || || ||| | || |||||| |||||||||||| |||| | |||||||| Sbjct 558 ACCTGAAGAAGAACACAGGGAAGGAAGAGCAGCGAGCCAGGGACCTGTTCTTTGCACTCT 617 Query 97012 GGGTGCCAGATTTGTTCATGAAG 97034 || | || ||| | ||||||||| Sbjct 618 GGATCCCTGATCTCTTCATGAAG 640 >seq192473 Length=894 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 97209 GAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGC 97268 |||||||| || || ||||| ||||||||||| || || | || |||||||| | Sbjct 563 GAGACTGGCACCCCCTACATGCTCTACAAGGACTCCTGCAACAGGAAGAGCAACCAGCAG 504 Query 97269 CACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 || |||||||||||||| || ||| |||||||| || || || |||||| || Sbjct 503 AACCTGGGCACCATCAAGTGCAGCAACCTGTGCACCGAGATCGTGGAGTACACC 450 >seq22071 Length=8576 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| |||| || || || || || || |||||||||||||||||| ||||| || Sbjct 8287 GAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCT 8346 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || |||||||| |||||| | || || ||||| ||| |||| Sbjct 8347 ATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGAC 8387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738201675724800