Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1870 168 2e-36
seq22071 116 8e-21
seq82011 102 2e-16
seq51578 91.5 3e-13
>seq1870
Length=13139
Score = 168 bits (186), Expect = 2e-36
Identities = 135/163 (83%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|| ||||||||||||||| ||||||||||||| ||||| | ||||| | |||||||||
Sbjct 420 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 479
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
|| | ||||||||||| ||||||||||| || ||||| ||||| ||||| || |||||
Sbjct 480 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 539
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|| ||| | ||||| |||||||| ||| | ||||| |||||||
Sbjct 540 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 582
>seq22071
Length=8576
Score = 116 bits (128), Expect = 8e-21
Identities = 99/122 (81%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| ||||||
Sbjct 8296 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 8355
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
||||||| || ||||| ||||| ||||| |||||||| || ||| | || ||||| ||
Sbjct 8356 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 8415
Query 269258 GA 269259
||
Sbjct 8416 GA 8417
>seq82011
Length=15829
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|||||| | |||| || ||||| || || ||||| || |||||||| || ||||||||
Sbjct 12748 GGAGAACGCGTAGTAGCCTTTGCAGCCGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 12689
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
| || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| |
Sbjct 12688 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTC 12629
Query 269246 ATAAGCAGGGACGA 269259
|| || || || ||
Sbjct 12628 ATCAGTAGAGATGA 12615
Score = 93.3 bits (102), Expect = 1e-13
Identities = 94/121 (78%), Gaps = 1/121 (1%)
Strand=Plus/Minus
Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955
||||| | ||| |||| ||||||| ||||| || | ||||| | ||||| || || |
Sbjct 14411 TCTAGGTGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCT 14352
Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015
||||||| || || |||||||| |||||||| ||||||||||| | || || ||||| |
Sbjct 14351 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACTTACA 14292
Query 269016 T 269016
|
Sbjct 14291 T 14291
>seq51578
Length=9520
Score = 91.5 bits (100), Expect = 3e-13
Identities = 177/259 (68%), Gaps = 8/259 (3%)
Strand=Plus/Minus
Query 174073 CAGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAAC 174132
|||| |||| || | ||| ||||||||||| | ||| |||||| | ||||| ||||||
Sbjct 6067 CAGTGAATACTCCACACGGATTATACTACAGTCAAGGATTGAAGGAGAAACAGGTGGAAT 6008
Query 174133 TTTCAGCTGTTTATTATTCCAAATTTCAATATTACCAG----GAAGTAGTTGCTTTCCAC 174188
|||||||||||| |||||| |||| | || |||| ||| | || | ||||
Sbjct 6007 TTTCAGCTGTTTGCCATTCCAGGTTTCTGTTTTGCCAGATGACAAGGA-TTCC---CCAC 5952
Query 174189 GCGATGAGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTA 174248
|| || || ||| | | | |||| ||| || || | | | |||||||| ||||
Sbjct 5951 GCAGGTTGGCAACAAGCTGTTTGACTTCCTTCATTTTCCCTTTGGCATAAAATGCCTGTG 5892
Query 174249 TTTGGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAA 174308
||||||| || | || |||| || |||| || || || ||||| || ||||
Sbjct 5891 TTTGGTAAATGGCTGCCTTTGGCACCACCACACGGGAAGAGCAGTTCTCAATCTCAGCAA 5832
Query 174309 CTATCCTAACGTATTCACC 174327
|||| || |||||||
Sbjct 5831 ATATCTGAATTGATTCACC 5813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1146847612963840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |