Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq28317 84.2 1e-11
seq150728 82.4 4e-11
seq93779 82.4 4e-11
>seq28317
Length=2274
Score = 84.2 bits (92), Expect = 1e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| | | |||||| | |||||||||| ||||||| ||||||||||||| |||
Sbjct 942 AAAAAGCTTACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 1001
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||||||||||||| ||||
Sbjct 1002 CTCTAACCAACTGAGCTAACCGGCC 1026
>seq150728
Length=8450
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 2742 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2683
Query 11528 CC 11529
||
Sbjct 2682 CC 2681
>seq93779
Length=261
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 202 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 143
Query 11528 CC 11529
||
Sbjct 142 CC 141
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 260508097684480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |