Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2417 95.1 2e-14 seq82011 84.2 4e-11 >seq2417 Length=632 Score = 95.1 bits (104), Expect = 2e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 68360 TTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAA 68419 ||||||||| || ||||| || || ||| |||||||||||| | || || || | Sbjct 1 TTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCAAG 60 Query 68420 GGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||| |||||||||||||| ||||| |||||||| Sbjct 61 GGTGATGGTTTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 102 >seq82011 Length=15829 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 ||||||||| | |||||||| | ||| ||||||||||||||||||| | |||||| || Sbjct 15141 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 15200 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 15201 TACTGGATGGGGAA 15214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918068624025600